BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896860 Length=909 Score E Sequences producing significant alignments: (Bits) Value AT3G29075.1 | Symbols: | glycine-rich protein | chr3:11051489-... 1044 0.0 > AT3G29075.1 | Symbols: | glycine-rich protein | chr3:11051489-11052694 REVERSE LENGTH=1106 Length=1106 Score = 1044 bits (565), Expect = 0.0 Identities = 780/876 (89%), Gaps = 45/876 (5%) Strand=Plus/Plus Query 1 ATGCCGTATTACACCAACGACGACAATGACGTCGACGATTTCACCGAATACGATCCGTTG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 66 ATGCCGTATTACACCAACGACGACAATGACGTCGACGATTTCACCGAATACGATCCGATG 125 Query 61 CCGTATAGTGGAGGCTATGACATCACCGTAACATACGGCCGCTCAATTCCACCGTCCGAC 120 || |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct 126 CCTTATAGTGGAGGCTACGACATCACCGTGACATACGGCCGTTCAATTCCACCGTCCGAC 185 Query 121 GAGACTTGTTACCCTCTCTCGTCTCGCTCCGGCGACGCCTTTGAGTATCAGCGACCTAAC 180 |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 186 GAGACTTGTTACCCTCTCTCCTCTCTCTCCGGCGACGCCTTTGAGTATCAGCGACCTAAT 245 Query 181 TTCTCTTCAT-ACCACGAATCTTCTACTTATGACGACCAAGCTCTTAAAACCGAGTACAG 239 |||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 246 TTCTCTTC-TAACCACGATTCTTCTGCTTATGACGACCAAGCTCTTAAAACCGAGTACAG 304 Query 240 TAGCTATGCCCGACCCGGACCCATTGGATCTGGATCCGGTGGTTCTGATTTTGGCCGGAA 299 ||||||||| |||||||||||| | | ||||| | ||| ||||||||||||||||| Sbjct 305 TAGCTATGCACGACCCGGACCC----G-T-TGGAT-C--TGGATCTGATTTTGGCCGGAA 355 Query 300 ACCTAATTCTGGATATGGCGGAAGAACGGAGGTTGAGTATGGCCGGAAACCAGAATCGGA 359 |||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||| Sbjct 356 ACCTAATTCTGGATATGGAGGGAGAACGGAGGTTGAGTATGGCCGGAAAACTGAATCGGA 415 Query 360 GCACGGATCTGGCTATGGTGGGAGAATTGAGAGCGATTACATGAAGCCTAGCCATGGCGG 419 ||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| Sbjct 416 GCATGGATCTGGCTATGGTGGAAGAATTGAGAGCGATTACGTGAAGCCTAGCTATGGCGG 475 Query 420 TCGTAAGGATGATGATAACGATGGTCACaaaaaaaaaaGTGGTAAGGATTATGATGATga 479 || ||||||||| | ||||||||||||||||| | |||||||||||||||||||||| Sbjct 476 TCACGAGGATGATGGTGACGATGGTCACAAAAAACATAGTGGTAAGGATTATGATGATGG 535 Query 480 agatgagaagagtaagaagaaggagaag-a-a-gaag--g-ataagaagaaagatggtaa 533 |||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||| Sbjct 536 AGATGAGAAGAGTAAGAAGAAGGAGAAGGAGAAGAAGAAGGATAAGAAGAAAGATGGTAA 595 Query 534 taactctgaagaagatgagttcaagaagaagaagaagaaagatg-agtacaaggaccatc 592 |||||||||||| |||||||| |||||||||||||||||||| | |||||||||| |||| Sbjct 596 TAACTCTGAAGATGATGAGTTTAAGAAGAAGAAGAAGAAAGA-GCAGTACAAGGAGCATC 654 Query 593 atgatgatgat--t-atgatgagaagaagaagaagaagaaggactatgatgatgatgatg 649 ||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 655 ATGATGATGATGATTATGATGAGAAGAAGAAGAAGAAGAAAGACTATAATGATGATGATG 714 Query 650 agaagaagaagaagaaag-agtatcatgatgatga-ga--agaagaagaagaagga-a-t 703 |||||||||||||||| | | ||| |||||||||| || |||||||||||||| | | | Sbjct 715 AGAAGAAGAAGAAGAA-GCATTATAATGATGATGATGATGAGAAGAAGAAGAAGCATAAT 773 Query 704 -atca-tgatgatgatggtgataagaagaagaagcacta-tgattatgatgatgag-a-a 758 | || ||||||||||| ||| |||||||||||| | | | || ||||||||||| | | Sbjct 774 TA-CAATGATGATGATGATGAGAAGAAGAAGAAGAAGGAGT-ATCATGATGATGAGGATA 831 Query 759 -gaagaagaagaaag-actatcatgatgatgatggtgataagaagaagtagcactatgat 816 |||||||||||| | ||||| || ||||||||| ||| ||||||||| || | || || Sbjct 832 AGAAGAAGAAGAA-GCACTATGATAATGATGATGATGAGAAGAAGAAGAAGAAGGATCAT 890 Query 817 --t-atgatga-ga--agaagaagaagaagaaggat 846 | ||||||| || |||||||||||||||||||| Sbjct 891 CGTGATGATGATGATGAGAAGAAGAAGAAGAAGGAT 926 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44406985948 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5