BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896925
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29670.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1194 0.0
> AT3G29670.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:11527872-11529350 FORWARD LENGTH=1479
Length=1479
Score = 1194 bits (646), Expect = 0.0
Identities = 1144/1378 (83%), Gaps = 59/1378 (4%)
Strand=Plus/Plus
Query 1 ATGACACTACACATCATTGACATTGCCGGCGTCATCCCTGCCATAGACTCGGACTCGGTC 60
||||| |||||| ||||||| | |||| | |||| ||| ||| |||| |||| |||
Sbjct 81 ATGACGCTACACGTCATTGAGACTGCCCGAGTCA-CCC--CCACCGACT---ACTCAGTC 134
Query 61 CTGAACTCGGTCAACTTGTTCGC-AA-TCCCTTTAACTTTCTTTGATCTACCATGGCTAC 118
| ||||| | ||||||| | | || | |||||||||||||| || || ||||||||||
Sbjct 135 ATCAACTCAGCCAACTTG--CACAAACTTCCTTTAACTTTCTTCGACCTTCCATGGCTAC 192
Query 119 TGTTCCAGCCAGTCAAGCGAGTCTTCTTCTATAGA-CTCACCGAGTCGAAGCATGACCAT 177
| |||||||||||||| ||||||||||||| || ||||||||||| | | |||||||
Sbjct 193 TATTCCAGCCAGTCAAAAGAGTCTTCTTCTA-CGAGCTCACCGAGTCTACTCGTGACCAT 251
Query 178 TTCCACTCCATCAtcctccctaagctcaa--actccctctctcccttgtcctccgcaact 235
||||||||||| ||||||||||||||||| ||| |||| |||||| ||||||| ||||
Sbjct 252 TTCCACTCCATTATCCTCCCTAAGCTCAAGGACT--CTCTGTCCCTTATCCTCCGTAACT 309
Query 236 atctccctctctctGGCCGCATCACTTGGGA-CACAAACGAGCTTAAACCTAGCATAGTC 294
||||||||||| |||||| |||||||||||| | ||||||||| ||||| |||||| ||
Sbjct 310 ATCTCCCTCTCACTGGCCACATCACTTGGGAGC-CAAACGAGCCAAAACCGAGCATAATC 368
Query 295 GTCTCTCCAAACGACGCCGTTTTGGTGACGGTAGCCGAGAGTGACGCTGATTTTTCTCAT 354
||||| ||||| || |||||||||||| ||||||||||||||||||| |||||||||
Sbjct 369 GTCTCGGAAAACGGCGTCGTTTTGGTGACTATAGCCGAGAGTGACGCTGACTTTTCTCAT 428
Query 355 CTTTCCGGCTATGGACAACGTCCTGTT-TCCGAGTTACACAACTTGCTCCCCAAGTTACC 413
|||||||| |||||||| |||||| || || |||||||| |||| | |||||||||||
Sbjct 429 CTTTCCGGTTATGGACAGCGTCCT-TTGTCAGAGTTACATGCCTTGGTTCCCAAGTTACC 487
Query 414 CGTTTCTAATGACTCAGCGACCGCCTTCTCTACACAAATCACGTTGTTTCCGAACCAAGG 473
|||||| |||||||||||||||| ||||| | |||||||||||||||||| ||||||||
Sbjct 488 GGTTTCTGATGACTCAGCGACCGCTTTCTCCATACAAATCACGTTGTTTCCTAACCAAGG 547
Query 474 ATTCTCCATTGGCGTCGCAGGACATCATGCCGTTATGGACGGGAAAACGTCAAGCA-TGT 532
||||||||| || || |||| ||| ||||| ||| | ||||||||||||||||||| | |
Sbjct 548 ATTCTCCATAGGTGTTGCAGCACACCATGCTGTTTTAGACGGGAAAACGTCAAGCACT-T 606
Query 533 TTATCAAAGCTTGGGCTCATA-CATGCAAACACCAAC-TCGAAAATATAGCCTCTCTGCC 590
||||||||||||||||||| | | |||||||| ||| || | | || | ||||
Sbjct 607 TTATCAAAGCTTGGGCTCAAATC-TGCAAACAAGAACTTC----A-A-AG---C-ATGCC 655
Query 591 GGATATTTTAACTCCGTCTTATGATCGGTCATTGATCAAAGATTTGACCGGA-CTCGATG 649
||| | | |||||||||||||||| ||||| ||||||||| || |||| | || ||||
Sbjct 656 GGAGAATCTAACTCCGTCTTATGACCGGTCTTTGATCAAATATCCGACC-TATCTTGATG 714
Query 650 AAAAGATAATCCAGATGGTGAGATCGT-TGAAAG-GTAGCAAAACTAACATCAGAAGCTT 707
||||||| || || | |||||||| | | |||| | | | |||| ||||||||||||||
Sbjct 715 AAAAGATGATAGAGTTAGTGAGATC-TCTCAAAGAGGA-CCAAACCAACATCAGAAGCTT 772
Query 708 GACTCCGTTTCCCGCAAG-AGAACTCGGAGATGACGTAGTCTTGGCCACGCTCGTGCTCT 766
|||| || ||||| | || | |||||||||| || || || || |||||||| || ||||
Sbjct 773 GACTTCGCTTCCCTCTAGTA-AACTCGGAGACGATGTCGTGTTAGCCACGCTAGTTCTCT 831
Query 767 CTTGCGAC-GACATCAAGAAG-CTCAGGGAGCAAGTCAAGAACGTGTCACCAAGCCTTCA 824
|| | | | || || || || || ||||| |||||||||||||||||||| ||||| ||
Sbjct 832 CTCG-GGCTGATATTGAG-AGACTTAGGGAACAAGTCAAGAACGTGTCACCGAGCCTCCA 889
Query 825 CTTGTCGACTTTTGTCATTGCCTACGCCTACGCGTGGACCTGCTTT-GTGAAGGCACGTG 883
||||||||||||||||||||| ||||| ||||||||||| || ||| |||||||||||||
Sbjct 890 CTTGTCGACTTTTGTCATTGCTTACGCTTACGCGTGGACTTG-TTTCGTGAAGGCACGTG 948
Query 884 GAGG-AAGCGGAGAGAGATCAGTGAATTTCCTCTTCGTAGGAGATTTCAGAGAACGGTTA 942
|||| || ||| |||||||||| | || | |||||||||||||||||||| ||||||
Sbjct 949 GAGGTAA-TAAAGACAGATCAGTGAGTCTCTTGTTCGTAGGAGATTTCAGAGACCGGTTA 1007
Query 943 GATCCGAAGCTTCCGGCGACTTACTTCGGAAACTGTATGTTTCCGGTGGGTTGTTACAAC 1002
||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||| |||
Sbjct 1008 GATCCGAAGCTCCCGGGGACTTACTTCGGAAACTGTATGATTCCGGTGGGCTGTTATAAC 1067
Query 1003 CGTAAGGCGGTGGAGTTTACGGAAGAGAAAGGACTCGTAACGGCCGTTGAGGTTCTTAGC 1062
|||||||||| |||||||| ||||||||| ||| | || ||||| | |||| || |||||
Sbjct 1068 CGTAAGGCGGCGGAGTTTATGGAAGAGAAGGGATTTGTGACGGCGGCTGAGATTATTAGC 1127
Query 1063 GATTTGGTCAAAGGATTAAGTTCAAGAAAAATAGAGACGATCGTGAAGGA-GTTAGCGGA 1121
|||||||| ||||| || ||||||||||| |||||||| || | | | | || | |||
Sbjct 1128 GATTTGGTGAAAGGGTTGAGTTCAAGAAAGATAGAGACCATTGCGGA-CACTTTCGTGGA 1186
Query 1122 CA-G-TTTTGATTTCCAAAAAGGGAGTACACAGTTTGGGACTATAGCCGGGTCGACCCGT 1179
| | ||| | ||| || | ||||||||||||||||||| |||||||||||||||||
Sbjct 1187 -AGGATTTAG-TTTTCAGAGTTGGAGTACACAGTTTGGGACGATAGCCGGGTCGACCCGG 1244
Query 1180 TTGGGAATATACGAGTCGGATTTCGGGTGGGGAAGACCCGTTAAAGTTGATGTTGTCTCT 1239
|||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1245 TTGGGAGTATACGAGGCGGATTTCGGGTGGGGAAGACCCGTTAAAGTTGATATTGTCTCC 1304
Query 1240 ATTGATCAAGGAGAAGCGTTCTCTATGGCGGAGAGACGTGACGAATCAGGTGGTGTGGAG 1299
||||| |||||||||||| || | ||||| ||||||||||| || |||||||| || |||
Sbjct 1305 ATTGACCAAGGAGAAGCGATCGCAATGGCTGAGAGACGTGATGAGTCAGGTGGCGTTGAG 1364
Query 1300 ATTGGGATGTGTTTGAAAAAGACTGAAATGGACAACGTTA-TGGCTTTTTTCAACAAT 1356
||||| |||||||||||||||||||||||||| || | || ||||||||||||||
Sbjct 1365 ATTGGAATGTGTTTGAAAAAGACTGAAATGGATT-CGGTCGTGTCTTTTTTCAACAAT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5