BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897209
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33790.1 | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reducta... 732 0.0
> AT4G33790.1 | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related
male sterility protein | chr4:16204157-16207947
REVERSE LENGTH=1706
Length=1706
Score = 732 bits (396), Expect = 0.0
Identities = 804/1000 (80%), Gaps = 32/1000 (3%)
Strand=Plus/Plus
Query 356 CTTACGTATGTGGTGAAAAATCGGGATTGATAATGGAAACGCCATACCATATGGGTGAGA 415
||||||| || || |||||||| || |||||||||||||| || |||| |||||||||||
Sbjct 556 CTTACGTGTGCGGAGAAAAATCTGGCTTGATAATGGAAACACCGTACCGTATGGGTGAGA 615
Query 416 CGTTAAACGGAGTAATAGGTCTAGATATCAATC-AAGAGCAGAAGTTGGTTAAGGAGAAA 474
|||| || ||| | ||| |||| ||||| | | ||| | || |||||| ||||||||
Sbjct 616 CGTTGAATGGAACCACCGGTTTAGACATCAA-CTACGAGAAAAAATTGGTTCAGGAGAAA 674
Query 475 CTTAG-CAAGCTTCAAGCAACCGGAG-CTTTGCCCGAGACCATCACACAAGCCATGAAGG 532
||| | | |||| | || || ||||| | | || || |||||||| || |||||||||
Sbjct 675 CTT-GACCAGCTCCGAGTAATCGGAGCCGCT-CCTGAAACCATCACGGAAACCATGAAGG 732
Query 533 ATTTTGGACTTAGAAGGGCAAAGATGTACGGATGGCCAAACACATACGTGTTTACGAAGG 592
|| | ||||| ||| ||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 733 ATCTCGGACTCAGACGGGCAAAGATGTACGGATGGCCAAACACATATGTGTTCACCAAAG 792
Query 593 CAATGGGGGAAATGATAGTAGGGGTAAAAAGGGAGAATATGTCGGTAGTGATAATTCGTC 652
|||||||||| ||||| |||||| |||||| || ||| |||| | ||| | ||||||
Sbjct 793 CAATGGGGGAGATGATGGTAGGGACAAAAAGAGAAAATCTGTCACTTGTGTTGCTTCGTC 852
Query 653 CTTCAATTATTACCAGCACCTTCAAAGAACCATTCCCCGGCTGGACCGAGGGCATCAGGA 712
||||||||||||||||||| |||||||||||||| || || ||||| |||||||||||||
Sbjct 853 CTTCAATTATTACCAGCACATTCAAAGAACCATTTCCTGGTTGGACTGAGGGCATCAGGA 912
Query 713 CAATTGATAGTCTAGCTGTTGGATACGGTACAGGCAAGCTCACATGCTTCCT-TGGTGAT 771
| ||||||||| ||||||||||||| || | |||||| ||||| |||||||| || ||||
Sbjct 913 CTATTGATAGTTTAGCTGTTGGATATGGCAAAGGCAAACTCACGTGCTTCCTCTG-TGAT 971
Query 772 CTTAACGCTACATCGGATGTGATACCTGCAGATATGGTTGTTAATACAATGCTAGTGTCA 831
||| | ||| || |||||||| || ||||||||||| || ||| | || || || |||
Sbjct 972 CTTGATGCTGTTTCTGATGTGATGCCGGCAGATATGGTAGTAAATTCGATTCTTGTATCA 1031
Query 832 ATGGCTGCTCACGCTGGTGGACA-GAAAGAGATGATTTATCATGTGGGTTCTTCAATGAA 890
||||| ||||| || ||| ||| ||| ||||| ||||| ||||||||||||||| | |
Sbjct 1032 ATGGCCGCTCAAGCCGGTAAACAAGAA-GAGATTATTTACCATGTGGGTTCTTCACTTAG 1090
Query 891 AAATCC-ATTCAAAAATGAGAAAATG-CCGGAAATAGCATACCGGTATTTCACAA-CGAA 947
|||||| || |||||| ||| | || ||| |||| || ||||||||| ||| | ||
Sbjct 1091 AAATCCGATG-AAAAATTC-AAAGTTTCCTGAATTAGCGTATCGGTATTTCTCAATC-AA 1147
Query 948 ACCATGGACCAACAAAGAAGGGAAGGTGGTTCGGGTCGGGAA-ACTTGATGTTT-TGAGT 1005
||| ||||||||||||||||||||||| ||| ||||||| | |||| | | |||||
Sbjct 1148 ACCGTGGACCAACAAAGAAGGGAAGGTCGTTAAGGTCGGGGCCA-TTGA-GATCCTGAGT 1205
Query 1006 TCTATGCCTAGTTTCCATAGATACATGACCATTCATTA-TAT-ACTTCCTTTGAAGGGAC 1063
||||||| |||||||||||||||||||||||| | || | | | || | ||||||||||
Sbjct 1206 TCTATGCGTAGTTTCCATAGATACATGACCATACGCTACT-TGA-TTGCATTGAAGGGAC 1263
Query 1064 TTGAGTTACTGAACATGGTACTTTGTAAGTCGTTAGAGAAGAAATTG-AGGGATCTCAGT 1122
|||| || | ||||| ||||||| |||| ||| |||||| |||| || || ||| |
Sbjct 1264 TTGAATTGGTAAACATAATACTTTGCAAGTTGTTTGAGAAGGAATTTCAGT-ATTTCAAT 1322
Query 1123 AAGAAGATAAATTTTGTATTGCGGCTTGTCGATCTTTATCAACCTTACCTCTTTTTCTAT 1182
||||| ||||||||| |||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1323 AAGAAAATAAATTTTATATTCCGGCTTGTTGATCTCTATCAGCCTTACCTCTTTTTCTAT 1382
Query 1183 GGAATATTCGATGATACAAATACGGAAAAACTGC-AAAAACTATTGCCAGA-GACAGGAG 1240
|||||||| |||||| |||| || |||||| ||| ||||| | | | || ||| ||||
Sbjct 1383 GGAATATTTGATGATTCAAACACAGAAAAATTGCGAAAAA-TGGTATC-GAAGACGGGAG 1440
Query 1241 TGGAGACCAAAAT-TTTCTATTTTGATCCGAAGATTATCAATTGGGACGACTATTTTGTG 1299
| || | | | || ||| ||||| ||||| ||| || || ||||||||||||||||| ||
Sbjct 1441 TCGAAAACGAGATGTTT-TATTTCGATCCAAAGGTTCTCGATTGGGACGACTATTTTTTG 1499
Query 1300 TATACACATATTCCTGGGCTGGTTAAGTATGTCTTCAAAT 1339
| |||||| || ||||||| |||||||||||||| |||
Sbjct 1500 AACACACATGTTATTGGGCTGCTTAAGTATGTCTTCTAAT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5