BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897572 Length=186 Score E Sequences producing significant alignments: (Bits) Value AT3G06680.1 | Symbols: | Ribosomal L29e protein family | chr3:... 250 3e-66 AT3G06700.1 | Symbols: | Ribosomal L29e protein family | chr3:... 248 1e-65 > AT3G06680.1 | Symbols: | Ribosomal L29e protein family | chr3:2114254-2114879 REVERSE LENGTH=402 Length=402 Score = 250 bits (135), Expect = 3e-66 Identities = 161/173 (93%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 1 ATGGC-AAAGTCAAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGG 59 ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 ATGGCGAAA-TCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGG 127 Query 60 AATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAGTTCCT 119 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 128 AATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAGAGGAATGGATCCTAAATTCCT 187 Query 120 GAGGAACCAGAGGTACGCAAGGAAGCACAACATCAACG-GTGGCGAGAATGCT 171 || ||||||||||| ||||||||||||||| |||| | |||||||||||||| Sbjct 188 AAGAAACCAGAGGTATGCAAGGAAGCACAACGTCAA-GAGTGGCGAGAATGCT 239 > AT3G06700.1 | Symbols: | Ribosomal L29e protein family | chr3:2117347-2118007 REVERSE LENGTH=463 Length=463 Score = 248 bits (134), Expect = 1e-65 Identities = 165/180 (92%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 1 ATGGCAAAGTCAAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGA 60 ||||| ||||| ||||||||||||||||| || ||||| || || || || ||||||||| Sbjct 106 ATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGA 165 Query 61 ATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAGTTCCTG 120 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 166 ATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAATGGACCCTAAGTTCCTG 225 Query 121 AGGAACCAGAGGTACGCAAGGAAGCACAACATCAACGGT-GGCGAGAATGCTAGCGCTGA 179 |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| Sbjct 226 AGGAACCAGAGGTACGCAAGGAAGCACAACGTCAA-GGCCGGCGAGAATGCTAGCGCTGA 284 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8199120213 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5