BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897595 Length=1350 Score E Sequences producing significant alignments: (Bits) Value AT3G47500.1 | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504... 1892 0.0 > AT3G47500.1 | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504000-17506058 REVERSE LENGTH=1717 Length=1717 Score = 1892 bits (1024), Expect = 0.0 Identities = 1253/1361 (92%), Gaps = 25/1361 (2%) Strand=Plus/Plus Query 1 ATGATGATGGAGAGTAGAGATCCAGCTATTAAGCTCTTCGGTATGAAAATCCCTTTAACG 60 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || Sbjct 95 ATGATGATGGAGACTAGAGATCCAGCTATTAAGCTTTTCGGTATGAAAATCCCTTTTCCG 154 Query 61 GCGGTTTTTGAATCGTCGGTTACGGTGGAGGATGAGGAAGAAGATGACTGGAGCGGCGGA 120 |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| Sbjct 155 TCGGTTTTTGAATCGGCAGTTACGGTGGAGGATGACGAAGAAGATGACTGGAGCGGCGGA 214 Query 121 GATGACAAATCACCAGATAAGGTAACTCTAGAGATATCAGATAAGAACAACAAGAACTGT 180 ||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||| Sbjct 215 GATGACAAATCACCAGAGAAGGTAACTCCAGAGTTATCAGATAAGAACAACAACAACTGT 274 Query 181 AACAACAACAGTTTCAACAATTCGAATGATTCGAAACCCGAAA-CTGTGGATAAGGAGGA 239 ||| |||||||||| || | | ||||||||||||||| || |||| || ||||| Sbjct 275 AACGACAACAGTTT---TAA--C--A--ATTCGAAACCCGAAACCT-TGGACAAAGAGGA 324 Query 240 GGCGACATCAACCGATCAGATAGAGAGCAGCGATTCGCCTGAGGATAATCAGCAGACGAC 299 ||||||||||| |||||||||||||| || || ||||||||||||||||||||||||| Sbjct 325 AGCGACATCAACTGATCAGATAGAGAGTAGTGACACGCCTGAGGATAATCAGCAGACGAC 384 Query 300 AGCTGACGGTAAAACCCTGAAGAAACCGACTAAGATCCTACCGTGTCCGAGATGTAAAAG 359 | |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 385 ACCTGATGGTAAAACCCTAAAGAAACCGACTAAGATTCTACCGTGTCCGAGATGCAAAAG 444 Query 360 TATGGATACTAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTCGTCATTTCTG 419 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 CATGGAGACCAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTCGTCATTTCTG 504 Query 420 CAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCCGTGGGGGC 479 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 505 CAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCTGTGGGGGC 564 Query 480 AGGACGTCGTAAGAACAAAAGCTCCTCTTCTCATTACCGTCATATCACTATTTCCGAGGC 539 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 565 AGGACGTCGTAAGAACAAAAGCTCATCTTCTCATTACCGTCACATCACTATTTCCGAGGC 624 Query 540 TCTAGAGGCTGCGAGGCTTGATCCGGGGTTGCAGGCAAACACCCGGGTCTTGAGTTTTGG 599 ||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||||| Sbjct 625 TCTTGAGGCTGCGAGGCTTGACCCGGGCTTACAGGCAAACACAAGGGTCTTGAGTTTTGG 684 Query 600 TCTGGAAGCTCATCAACAGCACG---CTGCTCCCATGAAACCTGTGATGAAGCTACAGGG 656 ||| |||||||| || ||||||| |||||||||||| |||||||||||||||||| | Sbjct 685 TCTCGAAGCTCAGCAGCAGCACGTTGCTGCTCCCATGACACCTGTGATGAAGCTACAAGA 744 Query 657 AGATCAAAAGGCCTCAAACGGAGCTAGGAACGGGTTTCACGGGTTAGCGGATCAGCGGCT 716 ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||| Sbjct 745 AGATCAAAAGGTCTCAAACGGTGCTAGGAACAGGTTTCACGGGTTAGCGGATCAACGGCT 804 Query 717 TGTGGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAA 776 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 TGTAGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAA 864 Query 777 CAATCATTCAGTGGATGAATCAAGAGCACAAAGCGGCAGAGTTGTTGACCCACAAATGaa 836 |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 865 CAATCACTCAGTGGATGAATCAAGAGCACAAAGCGGCAGTGTTGTTGAAGCACAAATGAA 924 Query 837 caacaacaacaacaa---caTGAATGGTTATGCTTGCATCCCTGGTGTTCCATGGCCATA 893 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 925 CAACAACAACAACAATAACATGAATGGTTATGCTTGCATCCCAGGTGTTCCATGGCCTTA 984 Query 894 CACGTGGAATCCAGCGATGCCTCCACCAGGCTTTTACCCGCCTCCAGGGTATCCAATGCC 953 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 985 CACGTGGAATCCAGCGATGCCTCCACCAGGTTTTTACCCGCCTCCAGGGTATCCAATGCC 1044 Query 954 GTTTTACCCTTACTGGACCATCCCAATGTTATCACCGCATCAATCCTCATCGCCTATGAG 1013 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || Sbjct 1045 GTTTTACCCTTACTGGACCATCCCAATGCTACCACCGCATCAATCCTCATCGCCTATAAG 1104 Query 1014 CCAAAAAG-GTTCAAATCCAAACTCTCCCACTCTCGGAAAGCATTCGAGAGATGAAGAAT 1072 |||||| | |||||||| |||||||||| ||||||||||||||| |||||||||||| || Sbjct 1105 CCAAAA-GTGTTCAAATACAAACTCTCCGACTCTCGGAAAGCATCCGAGAGATGAAGGAT 1163 Query 1073 CCA-CGAAAAAGAACAACGAGACAGAGCGGAAACAGA-GGAACGGGTGCGTTCTGGTCCC 1130 | | |||||||| |||||||||||||||| ||||||| || |||||||||||||||||| Sbjct 1164 C-ATCGAAAAAGGACAACGAGACAGAGCGAAAACAGAAGGC-CGGGTGCGTTCTGGTCCC 1221 Query 1131 AAAAACGTTGAGAATAGACGATCCAAACGAAGCAGCAAAGAGCTCGATATGGACAACATT 1190 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1222 GAAAACGTTGAGAATAGATGATCCTAACGAAGCAGCAAAGAGCTCGATATGGACAACATT 1281 Query 1191 GGGAATCAAGAACGAAGG-GATGTGCAAAGCCGGTGGTATGTTCGAAGGGTTTGATAAGA 1249 ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| | | Sbjct 1282 GGGAATCAAGAACGA-GGCGATGTGCAAAGCCGGTGGTATGTTCAAAGGGTTTGATCATA 1340 Query 1250 AAACGAAGATGAATAACAACGAAAAAGCCGAAAATTCCCCTGTTCTTTCTGCTAACCCTG 1309 | || |||||| |||||||||| ||||| || || ||||||||||||||||||||||||| Sbjct 1341 AGACAAAGATGTATAACAACGACAAAGCTGAGAACTCCCCTGTTCTTTCTGCTAACCCTG 1400 Query 1310 CTGCTCTATCAAGATCACTCAATTTCCATGAACAAATATAG 1350 |||||||||||||||||| ||||||||||||||| || ||| Sbjct 1401 CTGCTCTATCAAGATCACACAATTTCCATGAACAGATTTAG 1441 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66465521580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5