BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897626
Length=174
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47836.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 294 1e-79
> AT3G47836.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:17650260-17651765 REVERSE LENGTH=400
Length=400
Score = 294 bits (159), Expect = 1e-79
Identities = 170/175 (97%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 1 ATGGGGATAGTGACTAGAGCTGGAGATTGGTCGTTTAAGGCTTTCACGGCGGGGCTAGGG 60
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 20 ATGGGGATAGTGACTAGAGCCGGAGATTGGTCGTTCAAGGCTTTCACGGCGGGGCTAGGG 79
Query 61 CTCGCCACCATCTACCTCACCGGC-ACTTTCTCCTTTAATGTCTATCGTGGTCTCTCTTG 119
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 80 CTCGCCACCATCTACCTCACC-GCTACTTTCTCCTTTAATGTCTATCGTGGTCTCTCTTG 138
Query 120 GCACAACGCTCAATCTAAGCTGGAGATAGAGGAATCTGAAGAACAACCCGAATGA 174
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 139 GCACAACGCTCAATCTAAGCTGGAGATTGAGGAATCTGAAGAACAACCCGAATGA 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7595504001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5