BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897667
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48210.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinetocho... 1441 0.0
> AT3G48210.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80
complex, subunit Spc25 (InterPro:IPR013255); Has
194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria
- 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses -
0; Other Eukaryotes - 17 (source: NCBI BLink). | chr3:17849359-17851683
FORWARD LENGTH=1311
Length=1311
Score = 1441 bits (780), Expect = 0.0
Identities = 893/949 (94%), Gaps = 2/949 (0%)
Strand=Plus/Plus
Query 1 ATGGAACAAATTAGCAACAACGCTGGTGGAGATACAACG-AAGAAAACTATGGCGTCTCT 59
||||||||||||||||||| |||||||||||| |||||| ||| | ||||||||||||||
Sbjct 77 ATGGAACAAATTAGCAACATCGCTGGTGGAGACACAACGAAAG-AGACTATGGCGTCTCT 135
Query 60 GGGTCTCATTTGTGAGAAAGATATAAATGAACAGCGTCACAAAATCGATTCCTTCATCGC 119
||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 136 GGGTCTCATCTGTGAGAAAGATATTCATGAACAGCGTCTTAAAATCGATTCTTTCATCGC 195
Query 120 TTCTCCTTTCCGGAGATCGAAGGACTCTTTAGTGGAGCGAGCTCAAGCCACTGCCCAAAA 179
|||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||
Sbjct 196 TTCTCCTTTCCGGAGATCGATGAACTCTTTAGTGGAGCGAGCTCAAGCCACTGCTCAAAG 255
Query 180 CCAAGTGGAACTAGTGAATTTGAAAGCGGATCTGAGAGAAGCAGAGGATGAGCTCGTTAA 239
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 256 CCAAGTGGAACTAATGAATTTGAAAGCGGATCTGAGAGAAGCAGAGGATGAGCTAGTTAA 315
Query 240 AGTGTTAGCAGTGAAAACCCGTAAAGAGGCACGGCAAATGGGGATAAGGGATTCCATTTC 299
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 316 AGTGTTGGCAGTGAAAACCCGTAAAGAGGCACGGCAAATGGGGATAAGAGATTCCATTTC 375
Query 300 TGCAACACAATCTAGGATTGAAGTGCTTAGAAGAACTTTGCAGTTACAGAAGTCAAAGAA 359
|||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||
Sbjct 376 TGCAACACAATCTAGGATTGAAGTACTTAGAAGAAATTTGCAGCTACAGAAGTCAAAGAA 435
Query 360 GGAAGATTCTGTGAGAATTATCTCCCAACAGTTGCAAGCTTTGTCAACATCTAAGGATAA 419
||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||
Sbjct 436 GGATGATTCTGTGAGAATTATCTCCCAACAGTTGCAAGCCTTGTCAAAATCGAAGGACAA 495
Query 420 TGCTGGTAAAGTCAGTGAAGACAAAACAGACATCCATGAAGCCATCTCTTGGTATAATCA 479
||||||||||||| ||||||||| |||| || |||||||| |||||||||||||||||
Sbjct 496 CGCTGGTAAAGTCACCGAAGACAAAGCAGATATTCATGAAGCAATCTCTTGGTATAATCA 555
Query 480 GGCTCTCGGTTTTCACGTTGAAGCTGGACATGGAGTGAAATTCACATTCACCAATATTGA 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 556 TGCTCTCGGTTTTCACGTTGAAGCTGGACATGGAGTTAAATTCACATTCACCAACATTGA 615
Query 540 TGCAAAAAGGCCGACCCGCGAATTTTCGTTCACAGTTCACTATGGAAATGACATCTACAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TGCAAAAAGGCCGACCCGCGAATTTTCGTTCACAGTTCACTATGGAAATGACATCTACAC 675
Query 600 ACTATTGGATTGCGACCTGCAATTGGATGACATCAACGATATGGTTCAAGAATTGAATAA 659
|||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 676 ACTATTGGATAGCGATCTGCAATTGGATTACATCAACGAGATGGTTCAAGAATTGAATAA 735
Query 660 AACCAATGACCTTTTCAGATTTGTTCGTCTGATGAGGGATAAGTTTCTGAAATCCACTTT 719
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 736 AACCAATGACCTTTTCAGATTTGTTCGTCTGATGAGGGAGCAGTTTCTGAAATCCACTTT 795
Query 720 ATCTGAGTTGCCAACACATTCAGAACATCTGCAACAGGAAACTTCTGTCATATCTGCTTC 779
||||||| ||||||||||||||| ||| |||||||||||||| |||| ||||||||||||
Sbjct 796 ATCTGAGCTGCCAACACATTCAGGACAACTGCAACAGGAAACGTCTGCCATATCTGCTTC 855
Query 780 AGCTCCAGCTATATCATTTTCCACTGATACAAACATGTCAACTCCAGAAAACAAGAGATC 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 856 AGCTCCAGCTATATCATTTTCCACTGATACAAACATGTCAACTCCAGAAAACAAAAGATC 915
Query 840 TAAGGTTCAAGTGATTCGGCGACAAAAAAGAGCTAGCGAATCACCACTCCTATCTCCTGT 899
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 916 TAAGGTTCAAGTGAATCGGCGACAAAAAAGAGGTAGCGAATCACCACTCCTAGCTCCTGT 975
Query 900 ATCTGCATCTGCCACTCGCCGGTCTTCTCGCCTTAAGGGTAAGAAATGA 948
||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 976 ATCCACATCTGCCACTCGCCGTTCTTCTCGCTTTAAGGGTAAGAAATGA 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5