BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897896
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50090.1 | Symbols: | Exonuclease family protein | chr3:185... 1243 0.0
> AT3G50090.1 | Symbols: | Exonuclease family protein | chr3:18575432-18577336
FORWARD LENGTH=969
Length=969
Score = 1243 bits (673), Expect = 0.0
Identities = 875/971 (90%), Gaps = 20/971 (2%)
Strand=Plus/Plus
Query 21 TTTGCAAGCTATGC--AT-CGCCAAGCCAATCGTCTTATGATTGAAAAGTTCAAGCAAGA 77
|||||||||||||| | ||| ||||||||||||| ||||||| |||||||||| ||||
Sbjct 9 TTTGCAAGCTATGCGTCTCCGCGAAGCCAATCGTCTCATGATTGCAAAGTTCAAGAAAGA 68
Query 78 ATCTCATGAC-AAAGACACTCCTGAGCAGAGGCTAATTCGATTGACCGTTGAGCATCCGC 136
||||| | | || ||| ||||||| ||||||||| ||||||||||| |||| ||||||
Sbjct 69 ATCTC-CGGCTAATGACTCTCCTGAACAGAGGCTAGTTCGATTGACCAATGAGAATCCGC 127
Query 137 AATACTGTGTCTACTTTTCGTTTCACTCACACTCCAAGGATTGGTTTGTATCCGATGTTG 196
||||| |||| |||||| |||||| ||| |||||||||| |||||||||||||||||||
Sbjct 128 AATACAATGTCGACTTTTTGTTTCATTCATACTCCAAGGACTGGTTTGTATCCGATGTTG 187
Query 197 GAACGAAAATGTCGAATGTGATGATTTCAAACCAAATGGTAGCTCTTGACTGTGAAATGG 256
||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 188 GAATGAAAATGTCAAATGTGATGATTCCAAACCAAATGCTAGCTCTTGACTGTGAAATGG 247
Query 257 TTCTTTGTGAAGATGGAACCGAGGGTGTGGTTAGAGTTGGCGCTGTTGACCGCAATTTAA 316
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TTCTATGTGAAGATGGGACAGAGGGTGTGGTTAGAGTTGGCGCTGTTGACCGCAATTTAA 307
Query 317 AGGTGATCCTTGATGAATTTGTGAAACCGCACAAACCTGTTGTTGACTATAGGACAACTA 376
||||||||||||| |||||||||||||| ||||||||||| || |||||||||||| |||
Sbjct 308 AGGTGATCCTTGACGAATTTGTGAAACCACACAAACCTGTGGTCGACTATAGGACAGCTA 367
Query 377 TTACAGGAGTTACTGCTGAAGATGTC-ATCAAAGCTACTCTCTCGT-TGGTTGATATACA 434
|||| ||||||||||||||||||||| | ||||| |||||||| | |||| ||||| ||
Sbjct 368 TTACTGGAGTTACTGCTGAAGATGTCCAA-AAAGCCACTCTCTC-TCTGGTGGATATTCA 425
Query 435 GGAAAAATTGCGGCCGTTTCTCTCTTCGGGTACAATTTTGGTAGGTCATCCCATAGTAAT 494
|||||||||| |||||||||| ||| | ||| |||||||| ||| |||||||||||| ||
Sbjct 426 GGAAAAATTGAGGCCGTTTCTTTCTGCTGGTGCAATTTTGATAGATCATCCCATAGTGAT 485
Query 495 TGATACTTCACTTGTATTTAAGTATCCTAATTCAAC-AAAGCGAAGAAGACCTTCTCTTA 553
|||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 486 TGATACTTCACTAGTATTTAAGTATCCTAATTCA-CGAAAGCTAAGAAGACCTTCTCTTA 544
Query 554 ATACCCTTTGCATGTCTGTGTTGGGGTACGAAGTCCAAAAGACAGGTGTTTCTCATCACT 613
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 545 ATACCCTTTGCATGTCTGTGTTGGGATACGAAGTCCAAAAGGCCGGTGTTTCTCATCACT 604
Query 614 GCGTACACGATGCAGTCGCTGCGATGAAACTTGCACTTGCTGTTATAGAGAAAAGAGTTG 673
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 605 GCGTACACGATGCAGCCGCTGCGATGAAACTTGCACTTGCTGTTATAAAGAAAAGAGTTG 664
Query 674 ACACAACAATCACACTAACTAAAGAGATGGTGGAGGCTGAGAAATCAAGACTCTTTCTAC 733
|||||||||||||| ||||||||||| | | ||||||||||||||||||||||
Sbjct 665 ACACAACAATCACATTAACTAAAGAG--GC------C-GAGAAATCAAGACTCTTTCTAC 715
Query 734 ATAGAATCCCTCACTTTCTGTCATCTGAAGAGCTGAAAAAAGATCTTTCTCAAAAGTTTT 793
|| ||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||||
Sbjct 716 ATCGAATCCCTCACCATCTGTCATCTGAAGAGCTGAAGAAAGATCTTGCTCTAAAGTTTT 775
Query 794 TTCCCAAAAAGTTTACAGTTGATGTTAAGCCAGCAAAAACACAAGGAGGTTACTATTGTG 853
|||||||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||
Sbjct 776 TTCCCAAAAACTTTACAATTGATGTTAAGCCAGCAAAAACACAGGGAGGTTATTATTGTG 835
Query 854 CAGTTGTTGTCTTCGGTAGCTCAGTAGAAGCAAATCAAGCATTTGAGAACATTAATGGAT 913
|||||||| |||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 836 CAGTTGTTATCTTTGGAAGCTCAGTAGAAGCAAATCAAGCATTTGAGAACGTTAATGGAT 895
Query 914 ACCAAGAAACGGATTCATCGGGGCCGCCACAGAAACTCATTTCTTGTTCAAGAGCTACTT 973
|| |||| |||||||||||||||| |||||||||||||||||||||||||| | |||| |
Sbjct 896 ACAAAGAGACGGATTCATCGGGGCTGCCACAGAAACTCATTTCTTGTTCAATATCTACAT 955
Query 974 TTTATATCCGT 984
||||| |||||
Sbjct 956 TTTATGTCCGT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5