BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897920

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17010.1 | Symbols:  | AP2/B3-like transcriptional factor fa...   257    4e-68
  AT3G17000.1 | Symbols: UBC32 | ubiquitin-conjugating enzyme 32 ...   139    1e-32


> AT3G17010.1 | Symbols:  | AP2/B3-like transcriptional factor 
family protein | chr3:5800460-5802468 FORWARD LENGTH=1074
Length=1074

 Score =  257 bits (139),  Expect = 4e-68
 Identities = 176/194 (91%), Gaps = 2/194 (1%)
 Strand=Plus/Plus

Query  138  TGGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGAATCAGACAACCTTCTCAGGTGGATA  197
            ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct  717  TGGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGATTCGGACAATCTTCTCAGGTGGATA  776

Query  198  TTCTAAATTGGCAAGAGAGTATCC-TTTAATGGTTGGTGACAAATGCACCTTCAAGCTCA  256
             || |||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||| |
Sbjct  777  CTCGAAATTGGCAAGAGAGT-TCCCTTTGATGGTTGGTGACAAATGCACCTTTAAGCTTA  835

Query  257  TCAAACCCTTAGAGTTCGTCCTTCTTACCTCCAAGAAGACCAGAGAGGACATCGATCACT  316
            |||||||||| ||||| |||||||||||||||||||||| ||||||| | || ||||| |
Sbjct  836  TCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGAACAGAGAGAAGATGGATCAGT  895

Query  317  ACATGATCGATTGA  330
             |||||||||||||
Sbjct  896  GCATGATCGATTGA  909


> AT3G17000.1 | Symbols: UBC32 | ubiquitin-conjugating enzyme 32 
| chr3:5797179-5799683 FORWARD LENGTH=1263
Length=1263

 Score =  139 bits (75),  Expect = 1e-32
 Identities = 101/113 (89%), Gaps = 3/113 (3%)
 Strand=Plus/Plus

Query  2     TGGGCGGCGGTTGGGCTCACAATCGCTATCGTAGTTCTTCTCCTGAAGAAGTTCATAAGA  61
             |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| |
Sbjct  946   TGGGCGGCGGTTGGGCTCACAATCGCTATCATGGTTCTTCTTCTGAAGAAGTTCATAAAA  1005

Query  62    TCAAGTGGTTATGGTGCTGGGTTTGTGGAT---CAGTCTTGAACTCTGATGAA  111
             |||| ||||||  || |||||||| |||||   ||||||||||||||||||||
Sbjct  1006  TCAAATGGTTACAGTACTGGGTTTATGGATGATCAGTCTTGAACTCTGATGAA  1058



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5