BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897920 Length=330 Score E Sequences producing significant alignments: (Bits) Value AT3G17010.1 | Symbols: | AP2/B3-like transcriptional factor fa... 257 4e-68 AT3G17000.1 | Symbols: UBC32 | ubiquitin-conjugating enzyme 32 ... 139 1e-32 > AT3G17010.1 | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:5800460-5802468 FORWARD LENGTH=1074 Length=1074 Score = 257 bits (139), Expect = 4e-68 Identities = 176/194 (91%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 138 TGGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGAATCAGACAACCTTCTCAGGTGGATA 197 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 717 TGGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGATTCGGACAATCTTCTCAGGTGGATA 776 Query 198 TTCTAAATTGGCAAGAGAGTATCC-TTTAATGGTTGGTGACAAATGCACCTTCAAGCTCA 256 || |||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||| | Sbjct 777 CTCGAAATTGGCAAGAGAGT-TCCCTTTGATGGTTGGTGACAAATGCACCTTTAAGCTTA 835 Query 257 TCAAACCCTTAGAGTTCGTCCTTCTTACCTCCAAGAAGACCAGAGAGGACATCGATCACT 316 |||||||||| ||||| |||||||||||||||||||||| ||||||| | || ||||| | Sbjct 836 TCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGAACAGAGAGAAGATGGATCAGT 895 Query 317 ACATGATCGATTGA 330 ||||||||||||| Sbjct 896 GCATGATCGATTGA 909 > AT3G17000.1 | Symbols: UBC32 | ubiquitin-conjugating enzyme 32 | chr3:5797179-5799683 FORWARD LENGTH=1263 Length=1263 Score = 139 bits (75), Expect = 1e-32 Identities = 101/113 (89%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 2 TGGGCGGCGGTTGGGCTCACAATCGCTATCGTAGTTCTTCTCCTGAAGAAGTTCATAAGA 61 |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| | Sbjct 946 TGGGCGGCGGTTGGGCTCACAATCGCTATCATGGTTCTTCTTCTGAAGAAGTTCATAAAA 1005 Query 62 TCAAGTGGTTATGGTGCTGGGTTTGTGGAT---CAGTCTTGAACTCTGATGAA 111 |||| |||||| || |||||||| ||||| |||||||||||||||||||| Sbjct 1006 TCAAATGGTTACAGTACTGGGTTTATGGATGATCAGTCTTGAACTCTGATGAA 1058 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15381931194 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5