BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897990 Length=1350 Score E Sequences producing significant alignments: (Bits) Value AT3G50910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2054 0.0 > AT3G50910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66480.1); Has 76 Blast hits to 75 proteins in 28 species: Archae - 0; Bacteria - 10; Metazoa - 7; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:18919513-18922238 FORWARD LENGTH=1861 Length=1861 Score = 2054 bits (1112), Expect = 0.0 Identities = 1258/1330 (95%), Gaps = 4/1330 (0%) Strand=Plus/Plus Query 1 ATGCCTACTTTTTCTGCTATTGCTTTGGATAGAATGCTAGAGCCAGGGGCTTCCACGTCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 279 ATGCCTACTTTTTCTGCTATTGCTTTGGATAGAATGCTAGAGCCAGGGGCTTCCACGTCT 338 Query 61 GTCGAGAGTGTTCCAAGCTCAACAAATTCGTTTTATTCTAAGCCACCAATATCAAAACTG 120 |||||||||||||||||| |||| |||| ||||||||| |||||||| |||||||||||| Sbjct 339 GTCGAGAGTGTTCCAAGCACAACTAATTTGTTTTATTCAAAGCCACCGATATCAAAACTG 398 Query 121 GAGAAAGGTAAAGGTAAATCACCTAGTGAGAGGACTGTTACTCGTCCTCTGATGTCACCT 180 ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| Sbjct 399 GAGAAAGGTAAAGGTAAATTACCTAATGAGAGGACAGTTACTCGTCCTCTGATGTCACCT 458 Query 181 GCTCTCTACGCCACACCTGATGCAATTCCGCTTCCCAATTCGCCATCTTCTTTCCCACCA 240 ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 459 GCTCTCTACGCCACACCTGATGCGATTCCGCTTCCTAATTCGCCATCGTCTTTCCCACCG 518 Query 241 TCGCCTTATATCATCAACCACAAATCACGTGGACCTCCACGTCTTCTTAAAAGCTCTTCT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 TCGCCTTATATCATCAACCACAAATCACGTGGACCTCCACGTCTTCTTAAAAGCTCTTCT 578 Query 301 GAGGCTAATGTTGTGTCTTCTTCCCACCAGAAGACGCTGGCAGAGGAAACTATTACTGCT 360 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 579 GAGGCTAATGTTGTGTCTTCTTCCCACCAGAAGACGCTGGAAGAGGAAACTATTACTGCT 638 Query 361 GAAACAGATGTAAAGGTTTCCCCTCGGAGGAGGTCCACCTCTTTCTCATTTCCTATCAGC 420 |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| | Sbjct 639 GAAACAGATGTAAAGGTTTCCCCTCGGAGGAGGTCCACTTCCTTCTCGTTTCCTATCA-C 697 Query 421 -GAGGCTACTGAAGACGATTATTCCAATGGAGTCCATGCTCGTCCGGTTGGAAATTATAA 479 |||| ||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||| Sbjct 698 TGAGGTTACTGAAGATGATTATTCCAATGGAGTTCATGCTCGTACGGTTGGAAACTATAA 757 Query 480 TTTCGATGGTATTGTTGATGGTCCTTTTGGGCATTGGAGTTCACTTGACGGTAAAATTGG 539 ||| ||||||||||||||||||||| |||| |||||||| | ||||| || |||| ||| Sbjct 758 TTTTGATGGTATTGTTGATGGTCCTGTTGGAAATTGGAGTCCGCTTGATGGGAAAAGTGG 817 Query 540 GAATGGAAAGTCAGAGTTGGATAATGCTGCTAATGGTTTAGAATGGGAAAATGTTCTGAC 599 |||||| ||||||||||||||||| |||||||||||||||||| ||| ||||| |||| | Sbjct 818 GAATGGGAAGTCAGAGTTGGATAACGCTGCTAATGGTTTAGAACGGGTAAATGGTCTGTC 877 Query 600 TGAGCCTGTCACTATCAAAACAGACAAGGAGAGTGAGTCTGAAGATTTCTATGACCCAGG 659 |||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 878 TGAGCCAGTCCCTATTAAAACAGACAAGGAGAGTGAGTCAGAAGATTTCTATGACCCAGG 937 Query 660 TGAATCAGCAAGCTTCACAAGTAACACAGACGTAGAGGGTGATGCAGGAGACGAAGGTTC 719 ||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| Sbjct 938 TGAATCAGCAAGCTTCACAAGTAACACAGACGTAGAGGGTGATGCTGGGGACGAAAGTTC 997 Query 720 ACATAGACTTGCCACACCTGTTGGAGAATTTTATGATGCTTGGGATGAACTATCAACAGA 779 ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || Sbjct 998 ACAAAGACTTGCCACACCTGTGGGAGAGTTTTATGATGCTTGGGATGAACTATCAACCGA 1057 Query 780 CAGTGGAATGCAGAGTTCAGGTAACAACATCGAATCTGAATTAAGGGAGATAAGGCTGAG 839 |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| Sbjct 1058 CAGTGGAATGCAGAGTTCAGTTAATAACATCGAATCTGAATTAAGTGAGATAAGGCTGAG 1117 Query 840 TTTAGTAATGGAAATCGAGAAAAGAAAACAGACAGAGGAGGCTCTGGAGCAGATGCAAAT 899 |||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 1118 TTTACTAATGGAAATCGAGAAGAGAAAACAGACAGAGGAGGCTTTGGAGCAGATGCAAAT 1177 Query 900 TCACTGGCAGAGACTCCGTGAGCAGTTGGCTCAGGTGGGTCTGTTCGTTCCCATTGATCC 959 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 1178 TCACTGGCAGAGACTCCGTGAGCAGATGGCTCAGGTGGGTCTGTTCGTTCCTATTGATCC 1237 Query 960 TACCACCTCCACCAACAACATGAATCTATCAGAAGAACTACGCTGCCAACTCGAGGTTGC 1019 |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1238 TACCGCCTCCACCAACAACATGAATCTATCAGAAGAACTACGCTGTCAACTCGAGATTGC 1297 Query 1020 CAGGTTTGTCTCTGACTCTTTAGGCAGAGGTATGGCGAAAG-CGGAGGTAGAGATGGAGA 1078 ||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| Sbjct 1298 GAGGTTTGTCTCTGACTCTTTAGGCAGAGGTATGGC-AAAGGCCGAGGTAGAGATGGAGA 1356 Query 1079 TGGAATCTATGCTCGAAACTAAGAACTTTGAAATAACACGGTTGTCTGACCGTCTACACT 1138 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1357 TGGAATCTATGCTCGAAACTAAGAACTTTGAAATCACACGGTTGTCTGACCGTCTACACT 1416 Query 1139 ACTATGAGGCTGTGAACAGAGAAATGTCTCAACGAAACCAAGAGGCCATAGAGGTGGCAC 1198 |||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1417 ACTACGAGGCCGTGAACAGAGAGATGTCTCAACGAAACCAAGAAGCCATAGAGGTGGCAC 1476 Query 1199 GACgagagaggcagaagagaaagaagaggcagagaTGGATTTGGGGATCAATTGCAGCAA 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1477 GACGAGAGAGGCAGAAGAGAAAGAAGAGGCAGAGATGGATTTGGGGATCAATTGCAGCAA 1536 Query 1259 CCATTACTCTAGGAAGTGCGGCATTGGCATGGTCTTACATTCCTGCATCGAAACCATCAT 1318 |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| Sbjct 1537 CCATTACTCTAGGAAGCGCGGCATTGGCATGGTCTTACATTCCTGCAGCCAAACCATCAT 1596 Query 1319 CTGAAGTATC 1328 |||||||||| Sbjct 1597 CTGAAGTATC 1606 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66465521580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5