BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898325
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit... 2529 0.0
> AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit
C | chr3:19960869-19963949 REVERSE LENGTH=2017
Length=2017
Score = 2529 bits (1369), Expect = 0.0
Identities = 1604/1718 (93%), Gaps = 13/1718 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTTCAATTCATTCCCAATTCCCAAACAGATTGTTGGTTCTTCTTCTTCGTCG 60
||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 130 ATGGCTTCCTTCAATTCGTTCCCCATTCCCAAACAGATTGTTGGTTCTTCTTCTTCGTCG 189
Query 61 TCCTCGTCTACTTCTCGGCCACGTATCTTGGTGCGATCGAGTATAACATCGTCCATGAGC 120
||||| |||||||||||||||||||| || |||||||||||| |||||||||| |||| |
Sbjct 190 TCCTCCTCTACTTCTCGGCCACGTATTTTAGTGCGATCGAGTTTAACATCGTCTATGACC 249
Query 121 TCTACCAATAGTATGCTGGTCTTCGTACCTCCACATCCTTTGATTAAACATTGGCTCTCG 180
||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 250 TCTACCAATAGTATGCTGGTCTTTGTACATCCTCATCCTTTGATTAAACATTGGCTCTCG 309
Query 181 TTATTGAGATGTGACCAAACTTCTTTCCCTATTTTCGTTAGAATTCCGGTGAGTTCCT-T 239
|||||||||| |||||||||||||||||| ||||||||||||||||| ||| || || |
Sbjct 310 TTATTGAGATCTGACCAAACTTCTTTCCCCATTTTCGTTAGAATTCCAATGACTT-CTGT 368
Query 240 TGTTGCAACGAGGTGGTCGTTTCTATCCTCAGTCAAAGAGGAAAGCAGAATATATCAGAA 299
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 369 GGTTGCAACGAGGTGGTCGTTTCTATCCTCAGTCAAAGAGGAAAGCAGAATTTATCAGAA 428
Query 300 AGATCCTCTTAAAGCA------TGCGCATCT-TCAGCTCCCTACACTGCAGAAAAT-GTA 351
||| |||| |||||| ||||||||| | | |||| ||||||||| ||||| |
Sbjct 429 CGATTCTCTAAAAGCATGTGGCTGCGCATCTGT-ATCTCCTTACACTGCACAAAATAATG 487
Query 352 TTT-T-TAGAGCTCAAAGACCCAAAGGAAAATATTGGTGTGGGTTCTGCAGAAAAATCAT 409
||| | | ||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 488 TTTATGTTGAGCTCAAAGACCCAAAGGAAAATATTGGCGTGGGTTCTGCAGAAAGATCAT 547
Query 410 ACTCATCTCGTAGCATGTTGCAATACAATTTACTAGCAAAGAACCTTTTGGCACTAGAGG 469
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 548 ATTCATCTCGTAGCATGTTGCAATACAATTTACTGGCAAAGAACCTTTTGGCACTAGAGG 607
Query 470 AAACTTTTGTTGCCTTGGATTCTTTAAGAATGGAAAGAGATATTATGTTGCAAATGGGGA 529
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 608 AAACGTTTGTTGCCTTGGATTCTGTAAGAATGGAAAGAGATATTATGTTGCAAATGGGGA 667
Query 530 AGCTGGGGGCTGCTGACTTATTTAAAACCTGCCTATCTAGATCTCGTGGTTCTTCAGTTG 589
|| ||||||||||||| |||||||||||||| |||||||| | ||||||||| ||| |
Sbjct 668 AGTTGGGGGCTGCTGAGTTATTTAAAACCTGTCTATCTAGGTATCGTGGTTCCTCAATCA 727
Query 590 CGTCATGCTTATCTGACACAACCGAGTTGGTGGGTACTACACCGAAACAGCAAGTCTTTG 649
|||| ||||||||||||||||| |||||||||| |||||| ||||| || ||||||||||
Sbjct 728 CGTCGTGCTTATCTGACACAACTGAGTTGGTGGATACTACGCCGAATCAACAAGTCTTTG 787
Query 650 TATCCTCGAGAAGAAAATTGAAAGAGAAATCAAGAAGGTCGAGTGTGACAGCTGAGAATG 709
|||||||||| |||||| | ||| ||||| |||| |||||||||||||||||||||||||
Sbjct 788 TATCCTCGAGGAGAAAAGTAAAAAAGAAAGCAAGGAGGTCGAGTGTGACAGCTGAGAATG 847
Query 710 GTGATCAGGGTTCTTTGCCAATCGGTTTGAGAACCACATGGAATAATATTGATGTCCCTA 769
|||||||| ||||| ||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 848 GTGATCAGAGTTCTCTGCCAATCGGTTTAAGAACTACATGGAACAATATTGATGTCCCTA 907
Query 770 GAGGGAGAAGACCACCAAAATATAGAAAGAAAAGAGAGAGGATCTCTAGAAACGAGGCTG 829
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 908 GAGTGAGAAGACCACCAAAATATAGAAAGAAAAGAGAGAGGATCTCTAGAAACGAGACTG 967
Query 830 AGATGTCAACAGGAGTCAAGATAGTGGCGGACATGGAGAGAATCAGAACACAACTGGAGG 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AGATGTCAACAGGAGTCAAGATAGTGGCGGACATGGAGAGAATCAGAACACAACTGGAGG 1027
Query 890 AAGAAAGTGGTAAGGTAGCGAGTTTGAGTTGTTGGGCTGAAGCAGCTGGGATGAACGAAA 949
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1028 AAGAAAGTGGTAAGGTAGCGAGTTTGAGTTGTTGGGCTGCAGCAGCTGGGATGAACGAGA 1087
Query 950 AACTCCTGATGCGCAATCTACATTATGGTTGGTACTGTAGAGATGAACTGTTAAAAAGCA 1009
||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 1088 AACTCCTGATGCGCAATCTACATTACGGTTGGTACTGTAGAGATGAACTGGTGAAAAGCA 1147
Query 1010 CCCGGTCTTTGGTTCTCTTCCTTGCAAGAAATTACCGTGGACTGGGAATCGCCCACGAAG 1069
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1148 CCCGGTCTTTGGTTCTCTTCCTCGCAAGAAATTACCGTGGACTGGGAATCGCCCACGAAG 1207
Query 1070 ATTTAATTCAGGCAGGGTATGTGGGGGTGTTACAAGGAGCAGAGAGGTTTGATCACACTA 1129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1208 ATTTAATTCAGGCAGGGTATGTGGGGGTGTTACAAGGAGCAGAGAGGTTTGATCACACAA 1267
Query 1130 GGGGTTACAAGTTTTCAACATATGTGCAGTATTGGATAAGAAAATCAATGTCCATGATGG 1189
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1268 GGGGTTACAAGTTTTCAACATATGTGCAGTATTGGATAAGAAAATCAATGTCTACGATGG 1327
Query 1190 TGTCACGGCATGCAAGAGGCGTCCATATTCCTTCATCAATAATTCGAACTATCAATCAGA 1249
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1328 TGTCACGGCATGCAAGAGGCGTCCATATTCCTTCATCAATAATCCGAACTATCAATCATA 1387
Query 1250 TACAAAAGGCTCGTAAGACCTTGAAAACGAGCCACGGGATAAAATATCCGGCGGATGAGG 1309
|||||||||||||||||||| ||||||||||||| || ||||||||| |||| |||||||
Sbjct 1388 TACAAAAGGCTCGTAAGACCCTGAAAACGAGCCATGGTATAAAATATGCGGCTGATGAGG 1447
Query 1310 AGATTTCGAAACTAACAAGCCTCTCTGTGAAAAAGATTCGAGCAGCTAACCAATGCCTAA 1369
||||| | ||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1448 AGATTGCAAAACTAACAGGCCACTCGGTGAAGAAGATTCGAGCAGCTAACCAATGCCTAA 1507
Query 1370 AAGTGGTCGGTTCAATCGAAAAGAAAGTCGGGGATTGCTTTTCTACAAAATTCCTGGAAT 1429
|||||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||
Sbjct 1508 AAGTGGTCGGTTCAATTGACAAGAAAGTTGGGGATTGCTTTACTACAAAATTCCTGGAAT 1567
Query 1430 TTACACCGGACACGACGATGGAGAGTCCTGAGGAGGCCGTGATGAGGCAGAGCGCGAGGA 1489
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 TTACACCAGACACAACGATGGAGAGTCCTGAGGAGGCCGTGATGAGGCAGAGCGCGAGGA 1627
Query 1490 GAGACATACATGATATTTTAGAAGGGCTAGAGCCAAGAGAGAAGCAAGTGATGGTTCTAC 1549
|||||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1628 GAGACATACATGATCTTCTAGAAGGGTTAGAGCCAAGAGAGAAGCAAGTGATGGTCCTAC 1687
Query 1550 GTTATGGTCTTCAAAACTACAGGCCCAAGTCCCTGGAAGAGATTGGGAAGCTTCTTAGGG 1609
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1688 GTTATGGTCTTCAAGACTACAGGCCCAAGTCCCTGGAAGAGATTGGGAAGCTTCTTAAAG 1747
Query 1610 TTAGCAAAGAATGGATTCGGAAGATCGAACGGAGAGCGATGGCGAAACTCAGGGACCAAC 1669
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1748 TTAGCAAAGAATGGATTCGGAAGATCGAACGGAGAGCAATGGCTAAACTCAGAGACCAAC 1807
Query 1670 CCAACGCCGAAGACCTCAGATATTATTTGAATCAGTAA 1707
||||||||||||||||||||||||||||||||||||||
Sbjct 1808 CCAACGCCGAAGACCTCAGATATTATTTGAATCAGTAA 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5