BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898573 Length=1458 Score E Sequences producing significant alignments: (Bits) Value AT5G38830.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia f... 929 0.0 AT3G56300.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia f... 900 0.0 > AT5G38830.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia family protein | chr5:15545569-15548186 REVERSE LENGTH=1823 Length=1823 Score = 929 bits (503), Expect = 0.0 Identities = 912/1106 (82%), Gaps = 41/1106 (4%) Strand=Plus/Plus Query 1 ATGGAGGAGGAGAAACCGGAGTTGACA-TTGTATAACACGATGACTCAGTTGAAAGAAGT 59 ||||||| ||||||| ||| |||| | | || ||||||||||| || ||||||||| Sbjct 93 ATGGAGGCGGAGAAAATGGAATTGA-AGCTCTACAACACGATGACGCAACAGAAAGAAGT 151 Query 60 TTTTAAGCCGATCAATCCCGGCAAGATCGGGA-TGTATGTCTGTGGCATCACCGCCTACG 118 ||| | || |||| ||| ||||| ||| ||| | || |||||||| |||||||| |||| Sbjct 152 TTTGATTCCAATCACTCCTGGCAAAATC-GGATTATACGTCTGTGGTATCACCGCTTACG 210 Query 119 ATTAT-AGCCATATTGGGCACGCTCGTGCCGCCGTCTCTTTTGACCTCCTTTACAGGTAC 177 ||| | |||||||| || || ||||| |||||||| || || || | |||||||| ||| Sbjct 211 ATT-TCAGCCATATCGGCCATGCTCGCGCCGCCGTTTCCTTCGATGTTCTTTACAGATAC 269 Query 178 TT-AAGGCACTTGGGTTATGAAGTTAATTATGTCAGAAATTTTACAGATGTTGATGACAA 236 || || ||| |||| |||||| |||| || |||| | ||||| || |||||||||||||| Sbjct 270 TTGAA-GCATTTGGATTATGATGTTACTTTTGTCCGCAATTTCACTGATGTTGATGACAA 328 Query 237 GGCTA--AAAAGTG----T--G--GGGAGAAG--CCGTTAGATTTGAGTAATCGCTTTTG 284 | || | ||| | | ||||||| |||||||||||||||||||| ||||| Sbjct 329 GATTATTGATCGTGCTAATAAGAATGGAGAAGACCCGTTAGATTTGAGTAATCGGTTTTG 388 Query 285 CGAGGAGTATCTT-CTAGATATGACTGCTCTTCAGTGCCTCCTTCCCACCCGCCAGCCTC 343 ||| || ||| || |||||||| |||||| |||||||||| |||||||| |||||||| Sbjct 389 CGATGAATAT-TTGGTAGATATGGGTGCTCTGCAGTGCCTCCCTCCCACCCACCAGCCTC 447 Query 344 GTGTCAGTGACCATATGGAGC-ACATCATTAAGATGATAGAAAAGATCATTGA-AAACGG 401 ||||||| || |||||||| | ||||||||||||||||||||||||||||||| ||| | Sbjct 448 GTGTCAGCGAACATATGGA-CAACATCATTAAGATGATAGAAAAGATCATTGAGAAA--G 504 Query 402 A-TGTGGGTATGCT-GTGGGTGGAGATGTGTTCTTCTCAGTGGATAAATCACCGAATTAC 459 | |||||||||| | |||| || |||||||||||||| || || |||||||||||||| Sbjct 505 ATTGTGGGTATG-TAGTGGAAGGGGATGTGTTCTTCTCCGTTGACAAATCACCGAATTAT 563 Query 460 GGTCAATTATCTGGGCA-ACGACTGGATCATACTCAAGCTGGTAAGCGTGTTGCTGTTGA 518 || ||||||||||||| | |||| ||||| | ||||||| |||||||||||||||| Sbjct 564 GGGAAATTATCTGGGCAGTTG-TTGGAACATACACGAGCTGGTGAGCGTGTTGCTGTTGA 622 Query 519 CTCAAGGAAGCGCAATCCTGCTGACTTTGCATTATGGAAGGCTGCAAAATCTGGTGAACC 578 || || ||||| || |||||||| ||||||||||||||||| ||||| ||| ||| || Sbjct 623 TTCGAGAAAGCGTAACCCTGCTGATTTTGCATTATGGAAGGCGGCAAAGCCTGATGAGCC 682 Query 579 AAGTTGGGAGAGTCCTTGGGGTCCAGGAAGACCAGGATGGCACATTGAGTGCAGTGCCAT 638 |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 683 AAGTTGGGAGAGCCCTTGGGGTCCAGGAAGACCAGGATGGCACATCGAGTGCAGTGCAAT 742 Query 639 GAGTGCTCATTACCTGTCTCAGAGATTTGACATTCATGGTGGTGGCGCAGATCTAAAATT 698 ||||| |||||| ||||||| || |||||| |||||||| ||||| |||||||| ||||| Sbjct 743 GAGTGTTCATTATCTGTCTCCGAAATTTGATATTCATGGAGGTGGTGCAGATCTTAAATT 802 Query 699 CCCGCACCATGAAAATGAGATCGCCCAGACATGTGCTGCTTGTGAAGATAGTGGTGTGAA 758 |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 803 CCCGCATCATGAAAATGAGATCGCCCAGACATGTGCTGCATGTGAGGATAGTGGTGTAAA 862 Query 759 TTACTGGTTGCATAATGGGCATGTCACCAACAACAATGTGAAGATGGGAAAATCACTGGA 818 ||||||||||||||||||||||||||| | |||||| | |||||||| ||||||| | | Sbjct 863 TTACTGGTTGCATAATGGGCATGTCACTATCAACAACGAGAAGATGGCAAAATCAAAGCA 922 Query 819 CAACTTTTTTACGATTAGAGAAATCACGGCTAAG-TATCATCCACTGGCTCTGAGACACT 877 ||||||| |||||||||||||| || |||| | || |||||| |||||||||| |||| Sbjct 923 CAACTTTAAAACGATTAGAGAAATAACCGCTA-GCTACCATCCATTGGCTCTGAGGCACT 981 Query 878 TCTTGATGAGTGCACAGTACCGTTCTCCTCTGAACTATTCGGTG--TCGCAGCTAGAGAG 935 |||||||||||||||||||||| |||||||||| | ||| || |||||||||||||| Sbjct 982 TCTTGATGAGTGCACAGTACCGGTCTCCTCTGAG-T-TTCACTGCCTCGCAGCTAGAGAG 1039 Query 936 TTCATCGGATGCTTTATATTGTGTTTATCAGACATTAGAAGACCTTGTTAAAGCTCTATC 995 ||| || || |||||||| | |||||| ||||| ||| |||| |||| | ||| ||| || Sbjct 1040 TTCGTCAGAAGCTTTATACTATGTTTACCAGACTTTACAAGATCTTGATGAAGGTCTGTC 1099 Query 996 GCCATATCGAGAAGAAATGAGTGGAGATGTTGGAAAGA-CTCAACAGTCTGCGGAAGCCA 1054 ||||||| ||| | | || || ||||| |||||| | || |||| |||| |||| | Sbjct 1100 ACCATATCAAGACGCATTGTCTGAAGATGGTGGAAA-ATCTGAACAAACTGCAGAAGGAA 1158 Query 1055 AAGAGATGATAAAGAAGGTGAAAAAC 1080 |||| || || |||||| | |||||| Sbjct 1159 AAGACATCATTAAGAAGCT-AAAAAC 1183 > AT3G56300.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia family protein | chr3:20880169-20882366 FORWARD LENGTH=1470 Length=1470 Score = 900 bits (487), Expect = 0.0 Identities = 582/629 (93%), Gaps = 2/629 (0%) Strand=Plus/Plus Query 1 ATGGAGGAGGAGAAACCGGAGTTGACATTGTATAACACGATGACTCAGTTGAAAGAAGTT 60 ||||||| |||||||||||| ||||||||||| ||||| |||||||| |||| |||||| Sbjct 10 ATGGAGGTGGAGAAACCGGATTTGACATTGTACAACACAATGACTCAACTGAAGGAAGTT 69 Query 61 TTTAAGCCGATCAATCCCGGCAAGATCGGGATGTATGTCTGTGGCATCACCGCCTACGAT 120 | ||||||||| ||||||||||| ||||| || ||||| || || |||||||| |||||| Sbjct 70 TATAAGCCGATGAATCCCGGCAAAATCGGAATCTATGTATGCGGTATCACCGCTTACGAT 129 Query 121 TATAGCCATATTGGGCACGCTCGTGCCGCCGTCTCTTTTGACCTCCTTTACAGGTACTTA 180 |||||||| ||||| ||||||||||||||||| || || |||||||||||||| |||||| Sbjct 130 TATAGCCACATTGGCCACGCTCGTGCCGCCGTGTCCTTCGACCTCCTTTACAGATACTTA 189 Query 181 AGGCACTTGGGTTATGAAGTTAATTATGTCAGAAATTTTACAGATGTTGATGACAAGGCT 240 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 190 AGGCACTTGGGTTATCAAGTTACTTATGTCAGAAATTTTACAGATGTTGATGACAAGGCT 249 Query 241 AAAAAGTGTGGGGAGAAGCCGTTAGATTTGAGTAATCGCTTTTGCGAGGAGTATCTTCTA 300 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 250 AAAAACTGTGGAGAGAAGCCGTTAGATTTGAGTAATCGCTTTTGCGAGGAGTATCTTTTA 309 Query 301 GATATGACTGCTCTTCAGTGCCTCCTTCCCACCCGCCAGCCTCGTGTCAGTGACCATATG 360 |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 310 GATATGGCTGCTCTTCAGTGCCTCCTTCCCACCCACCAGCCTCGTGTCAGTGATCATATG 369 Query 361 GAGCACATCATTAAGATGATAGAAAAGATCATTGAAAACGGATGTGGGTATGCTGTGGGT 420 || || ||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 370 GAACAGATCATTAAGATGATAGAAAAGATCATTGAGAATGGATGTGGGTATGCTGTGGGT 429 Query 421 GGAGATGTGTTCTTCTCAGTGGATAAATCACCGAATTACGGTCAATTATCTGGGCAACGA 480 || |||||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||| Sbjct 430 GGTGATGTGTTCTTCTCAGTGGACAAATCACCGAGTTATGGTCAGTTATCTGGTCAACGG 489 Query 481 CTGGATCATACTCAAGCTGGTAAGCGTGTTGCTGTTGACTCAAGGAAGCGCAATCCTGCT 540 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 490 CTGGATCATACTCAAGCTGGTAAGCGTGTTGCTGTTGACTCAAGGAAGCGTAATCCTGCT 549 Query 541 GACTTTGCATTATGGAAGGCTGCAAAATCTGGTGAACCAAGTTGGGAGAGTCCTTGGGGT 600 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 550 GACTTTGCATTACGGAAGGCTGCAAAATCTGGTGAACCAAGTTGGGAGAGCCCTTGGGGT 609 Query 601 CCA-GGAAGACCAGGATGGCACATTGAGT 628 | | |||||||||||||||||||| |||| Sbjct 610 C-ATGGAAGACCAGGATGGCACATCGAGT 637 Score = 652 bits (353), Expect = 0.0 Identities = 437/476 (92%), Gaps = 11/476 (2%) Strand=Plus/Plus Query 989 CTCTATCGCCATATCGAGAAGAAATGAGTGGAGATGTTGGAAAGACTCAACAGTCTGCGG 1048 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 929 CTCTATCGCCATATCGAGAAGAAATGAGTGGAGATGTTGGAAAGACTCAACAGTCTGCAG 988 Query 1049 AAGCCAAAGAGATGATAAAGAAGGTGAAAAACGCATTGAAATTCATCAACGTTTCAATCT 1108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 989 AAGCCAAAGAGATGATAAAGAAGGTGAAAAACGCATTGAAATTCATCAACGTTTCAATCT 1048 Query 1109 CCAAGCTCAAGAAAATTCAGAAAAAGCAGCGGATGTCGCTGGTTGTGTCACTGGTCGAGG 1168 |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1049 CCAAGCTCAAGAAAATGCAGAAGAAGCAGCGGATGTCGCTGGTAGTGTCACTGGTCGAGG 1108 Query 1169 TTGAGAAAGCAGTGAGGGAAGTTCTTGATGTGCTTGGTTTGCTCACGACTCTAAGCTACG 1228 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1109 TTGAGAAGGCAGTGAGGGAAGTTCTTGATGTGCTTGGTTTGCTCACGACTCTAAGCTACG 1168 Query 1229 GTGAGTTTTTGAAAGAGATGAAACAAAAGGCATTAACAAGAGCAGGAATGGGAGAAGAAG 1288 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1169 GTGAGCTTTTGAAAGACATGAAACAAAAGGCATTAACAAGAGCAGGAATGGGAGAAGAAG 1228 Query 1289 AGGTCTTGCGGAGGATTGAAGAGAGGAGACTA-G-CCCGAAAGAATAAAGATTTCAAGAG 1346 ||||||||| |||||||||||| |||| | || | |||| |||| |||||||||| ||| Sbjct 1229 AGGTCTTGCAGAGGATTGAAGAAAGGA-A-TATGGCCCGGAAGAGCAAAGATTTCAGGAG 1286 Query 1347 AAGCGATCAAATTAGAGAGTTGTTGGCAGCTAAAGGAATCGCCCTGGAGGATATTCCTGG 1406 |||||||| ||| ||||| |||||||| |||||||||| ||| |||||| ||||||| Sbjct 1287 AAGCGATCGGATTCGAGAGCTGTTGGCATTTAAAGGAATCTTCCTCGAGGATGTTCCTGG 1346 Query 1407 AAAAGACACGGTGTGGAGACCATGCACCCCTTTGA----GCCTAAATCCGGTTTAG 1458 | ||||| ||||||||||| | |||||| |||| ||||||||| ||||||| Sbjct 1347 A---GACACTGTGTGGAGACCTTCCACCCCATTGACCAAGCCTAAATCTGGTTTAG 1399 Score = 464 bits (251), Expect = 1e-129 Identities = 280/294 (95%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 660 GAGATTTGACATTCATGGTGGTGGCGCAGATCTAAAATTCCCGCACCATGAAAATGAGAT 719 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 634 GAG-TTTGACATTCATGGTGGTGGCGCAGATCTCAAATTCCCGCACCATGAAAATGAGAT 692 Query 720 CGCCCAGACATGTGCTGCTTGTGAAGATAGTGGTGTGAATTACTGGTTGCATAATGGGCA 779 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 693 CGCCCAGACATGTGCTGCTTGTGAAGATAGTGGTGTGAACTACTGGTTGCATAACGGGCA 752 Query 780 TGTCACCAACAACAATGTGAAGATGGGAAAATCACTGGACAACTTTTTTACGATTAGAGA 839 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 753 TGTCACCAACAACAATGTGAAGATGGGAAAATCATTGAACAACTTTTTTACGATTAGACA 812 Query 840 AATCACGGCTAAGTATCATCCACTGGCTCTGAGACACTTCTTGATGAGTGCACAGTACCG 899 |||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 813 AATCGCGGCTAACTATCATCCACTGGCTTTGAGACATTTCTTGATGAGTGCACAGTACCG 872 Query 900 TTCTCCTCTGAACTATTCGGTGTCGCAGCTAGAGAGTTCATCGGATGCTTTATA 953 ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 873 TTCTCCTCTCAACTATTCGGTTTCGCAGCTTGAGAGTTCATCGGATGCTTTATA 926 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71887180440 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5