BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898727
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57770.1 | Symbols: | Protein kinase superfamily protein | ... 433 1e-120
AT5G61455.1 | Symbols: U2.7 | U2.7; snRNA | chr5:24713264-24714... 135 3e-31
AT5G09585.1 | Symbols: U2.5 | U2.5; snRNA | chr5:2974555-297530... 135 3e-31
AT3G56705.1 | Symbols: U2.6 | U2.6; snRNA | chr3:21004259-21004... 135 3e-31
AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398... 135 3e-31
AT3G57645.1 | Symbols: U2.2 | U2.2; snRNA | chr3:21346342-21347... 135 3e-31
AT3G56825.1 | Symbols: U2.4 | U2.4; snRNA | chr3:21041727-21042... 135 3e-31
AT1G16820.1 | Symbols: | vacuolar ATP synthase catalytic subun... 135 3e-31
> AT3G57770.1 | Symbols: | Protein kinase superfamily protein
| chr3:21397542-21398853 FORWARD LENGTH=1242
Length=1242
Score = 433 bits (234), Expect = 1e-120
Identities = 267/283 (94%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 271 GGAAAGCAGGGAATCTATCAAGAACCGGCTAATGGTGACAGTTATAACATGATTATGTTA 330
||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 759 GGAAAACATGGATTCTATCAAGAACCGGCTAATGGTGACAGTTATAACATGATTCTGTTG 818
Query 331 CCTGATTATGTTGAGAAGTGTTTGGGGCGAGGACCGTTAGCTAAACTGATAGACCCATCG 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CCTGATTATGTTGAGAAGTGTTTGGGGCGAGGACCGTTAGCTAAACTGATAGACCCATCG 878
Query 391 ATGTTAAACAGTGCGGATGACGACATTCCTCATCATTCAAAACTGCAAATGGAAGCATTT 450
|||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 879 ATGTTAAACAGTACCGATGACGACATTCCTGATCATTCAAAACTGCAAATGGAAGCATTT 938
Query 451 GTTGATCTTGCTAT-GAGATGTGTTAGATTCAGACCAGAAGAAACCAAGCTTCATATGAT 509
||| ||||||| || |||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 939 GTTAATCTTGC-ATTGAGATGTGTTGGATTCAGATCAGGAGAAACCAAGCTTCATATGAT 997
Query 510 AGATGTTGCAAAAGAACTCAAGCGGATAGAAAACCAGACCTGA 552
|||||||||||||||||||||||||||| |||| |||||||||
Sbjct 998 AGATGTTGCAAAAGAACTCAAGCGGATACAAAAACAGACCTGA 1040
Score = 135 bits (73), Expect = 3e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 61 AAGGCCGAGAAAG 73
> AT5G61455.1 | Symbols: U2.7 | U2.7; snRNA | chr5:24713264-24714094
REVERSE LENGTH=831
Length=831
Score = 135 bits (73), Expect = 3e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 509
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 508 AAGGCCGAGAAAG 496
> AT5G09585.1 | Symbols: U2.5 | U2.5; snRNA | chr5:2974555-2975306
FORWARD LENGTH=752
Length=752
Score = 135 bits (73), Expect = 3e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 475
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 474 AAGGCCGAGAAAG 462
> AT3G56705.1 | Symbols: U2.6 | U2.6; snRNA | chr3:21004259-21004809
FORWARD LENGTH=551
Length=551
Score = 135 bits (73), Expect = 3e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 252
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 251 AAGGCCGAGAAAG 239
> AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398132
REVERSE LENGTH=871
Length=871
Score = 135 bits (73), Expect = 3e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 532
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 531 AAGGCCGAGAAAG 519
> AT3G57645.1 | Symbols: U2.2 | U2.2; snRNA | chr3:21346342-21347204
FORWARD LENGTH=863
Length=863
Score = 135 bits (73), Expect = 3e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 417
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 416 AAGGCCGAGAAAG 404
> AT3G56825.1 | Symbols: U2.4 | U2.4; snRNA | chr3:21041727-21042609
REVERSE LENGTH=883
Length=883
Score = 135 bits (73), Expect = 3e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 612
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 611 AAGGCCGAGAAAG 599
> AT1G16820.1 | Symbols: | vacuolar ATP synthase catalytic subunit-related
/ V-ATPase-related / vacuolar proton pump-related
| chr1:5756835-5758464 REVERSE LENGTH=646
Length=646
Score = 135 bits (73), Expect = 3e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 61 AAGGCCGAGAAAG 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5