BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898845 Length=366 Score E Sequences producing significant alignments: (Bits) Value AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein, c... 385 2e-106 > AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein, chloroplast | chr4:12821223-12823742 REVERSE LENGTH=1092 Length=1092 Score = 385 bits (208), Expect = 2e-106 Identities = 260/285 (91%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 79 tcttcttcttctccttcaatctctctcttACCAAAACTAATCTCGTTTGCTATTGCTCTA 138 |||||| |||||||| |||||||||| ||||||||||||||||| |||||| ||||| | Sbjct 241 TCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTATC 300 Query 139 TCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTTTCTCCTCTTCTCAGCCACTC 198 ||||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 301 TCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCACTC 360 Query 199 ACCACTCCTTTCAGTACCCAATCCAAGTTTGTGCAGATTGGTCTTCTCAATGGCAAAATT 258 ||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||| Sbjct 361 ACCACTCCTTTCA---CCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATT 417 Query 259 AGACCTTGCCCTTCCACGAACCCAGGTTGTGTATCGACGAATCCGACCTCATCTTCCTTC 318 || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 418 AGGCCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTC 477 Query 319 TCATTTCCATTGACGATCCGTGAAACCGATGCACAGGATCCCATT 363 || |||||||||||||||| ||||||||| |||||||||||||| Sbjct 478 TCTTTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATT 522 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17191570158 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5