BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898931 Length=2073 Score E Sequences producing significant alignments: (Bits) Value AT3G59780.1 | Symbols: | Rhodanese/Cell cycle control phosphat... 1363 0.0 > AT3G59780.1 | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr3:22086478-22090444 FORWARD LENGTH=2504 Length=2504 Score = 1363 bits (738), Expect = 0.0 Identities = 816/854 (96%), Gaps = 3/854 (0%) Strand=Plus/Plus Query 580 TCACTTCCTGATCCTAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGGAGTCCTTC 639 |||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 915 TCACTTCCTGATGCGAAAGCTAGCGTTGATGACTTTTCTTCTGGGGTCAAGGAGTCCTTC 974 Query 640 AGCTCTTCACTTAACCAAGGAGAAAATGCTGTAAAGAACACTTTGGAGTCCTTCTCCTCT 699 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 975 AGCTCTTCACTTAACCAAGGAGAAAATGCTGTAAAGAACACTTTGGAGTCCTTCTCCTCG 1034 Query 700 TCTGTGACATCTATTACAAAGAATGCTTCTGAAGTTGTAGATGA-TGCATTTAACAGAGC 758 ||||||||||| |||||||||||||||||||||||||||||| | |||| |||||||||| Sbjct 1035 TCTGTGACATCCATTACAAAGAATGCTTCTGAAGTTGTAGAT-AGTGCAGTTAACAGAGC 1093 Query 759 GTTTTCTGCGGTCGACCAAACAGGAGATATAGCTGGAGACAAGTTTTCAAGTTTTTCTAC 818 ||||||| || | |||||||| |||||| ||||||||||||||||||| ||||||||||| Sbjct 1094 GTTTTCTACGCTAGACCAAACGGGAGATGTAGCTGGAGACAAGTTTTCGAGTTTTTCTAC 1153 Query 819 TGGCTTGAAGGAAGCTTCAAACAGAGCAGCTGTTATTGCCATTGATCTGTTGAGGCAATC 878 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1154 TGGCTTGAAGGAAGCTTCAAACAGAGCAGCTGTTATTGCCATTGATCTGCTGAGGCAATC 1213 Query 879 AGTTAGTATTGCAGAAAGTTCTGTTACAAATGGAGTTTCTTTTGTTGTTTACTCTTATGG 938 ||||||| ||| ||| || ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1214 AGTTAGTCTTGGAGAGAGATCTGTAACAAATGGAGTTTCTTTTGTTGTGTACTCTTATGG 1273 Query 939 GTCAGCAAAAGATTTACTTCCTCCAGATGTTAAGAGTGCCCTTAACTCGTCAGAAGATGT 998 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1274 ATCAGCAAAAGAATTACTTCCTCCAGATGTAAAGAGTGCCCTTAACTCGTCAGAAGATGT 1333 Query 999 TGCTCTAAAAGTATTGAGTCCCGTGGGAGCTGTGTTGCAGCAGGTATCTGTTGCCATTGG 1058 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1334 TGCTCTAAAAGTATTGAGTCCCGTGGGAGCTGTATTGCAGCAGGTATCTGTTGCCATTGG 1393 Query 1059 AGGTTTGGAGAGAAATTTCGGTTTGGATCCAGATGACCCAATCATTCACCTTTTTCTATT 1118 |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || Sbjct 1394 AGGTTTGGAGAGAAATATCGGTTTGGATCCAGATGACCCAATCCTTCACCTTTTTCTCTT 1453 Query 1119 CGTAGGCACCACAGGAACCTTTTGGGTTCTATATCGGGTTTGGACATATGGTGGATATGC 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1454 CGTAGGCACCACAGGAACCTTTTGGGTTCTATATCGGGTTTGGACATATGGTGGATATGC 1513 Query 1179 TGGAGATTTGTCTCCCAAGTCAACTCTGGACCTTTTAAAATCAAGAGAAAAGTCAGTGCT 1238 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1514 TGGAGATTTGTCTCCCAAGTCAACTCTGGACCTTTTAAAATCAAGAGACAAGTCAGTGCT 1573 Query 1239 CATAGACGTCAGGCCTGAAGCCTTGAGAGAGAAAGATGGAATCCCTGATCTGCGGAGATC 1298 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1574 CATAGATGTCAGGCCTGAAGCCTTGAGAGAGAAAGATGGAATACCTGATCTGCGGAGATC 1633 Query 1299 AGCTCGATTTCGATATTCTAGCGTGACACTGCCTGAGGTTGACGGTGCTGTCAAACGGCT 1358 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1634 AGCTCGATTTCGATATTCTAGCGTGACACTGCCTGAGGTTGACGGTGATGTCAAACGGCT 1693 Query 1359 ACTGAAAGGTGGAAGTGAGGTTGATGATATTTTGACAGCAGTAATCATCAAGAACTTGAA 1418 |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| Sbjct 1694 ACTGAAAGGTGGAAGTGAAGTAGATGATATCTTGACAGCAGTAATCATCAAGAACTTGAA 1753 Query 1419 AACAGTTCAGAGAC 1432 || ||||||| ||| Sbjct 1754 AATAGTTCAG-GAC 1766 Score = 562 bits (304), Expect = 5e-159 Identities = 385/423 (91%), Gaps = 9/423 (2%) Strand=Plus/Plus Query 1 ATGTTTCCCCTGTGCTCAGCCGCAAGCTGCCATTACCATTCTCAGATTTTATTTCCTAGC 60 ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| || Sbjct 324 ATGTTTCCCCTGTGCTCGGCCACAAGCTGCCGTTACCATTCTCAGATTTTATTTCCTGGC 383 Query 61 AATTGGCGAGGCTGTTCTTCCTTCAGGAGAGAGTTGATTCACAGATACAGTTCTGGTGAC 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 384 AATTGGCGAGGCTGTTCTTCCTTCAGGAGAGAGTTGATTCACAGATACAGTTCAGGTGAC 443 Query 121 AATGCCTTCTTTGGTATCTCTAATGGAACACGCCTGCAGAAGAGTTTCTTACCTCAAGCC 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 444 AATGCCTTCTTTGGTATCTCTAATGGAACACGCCTGCAGAAGAGTTTCGTACCTCAAGCC 503 Query 181 ACTGGGAGTTTCTTCACCGGTACTATCGAAAAAGTAGAGCAACCAGTATCAACATTCAGA 240 |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| || Sbjct 504 ACTGGGAGTTTCTTGACCGGTACTATCGAAAAAACAGAACAACCAGTATCAACATTCGGA 563 Query 241 AGTTTGTGCCAGAATGAGTTGGACAGAATAGAC-----G-TTTATGACTTGAGTGAAGCT 294 |||||||||||||||||||||||||||||| || | ||||| || ||||||||||| Sbjct 564 AGTTTGTGCCAGAATGAGTTGGACAGAATAAACTACATGGTTTATAACATGAGTGAAGCT 623 Query 295 ATTGTAGCGGGTGATGGGGGACTGGCATATGTAGA---TGGAGAAGATGTTTTCCCTGTT 351 |||||||| |||||| ||||||| |||||||||| |||||||||||| ||||||||| Sbjct 624 TTTGTAGCGAGTGATGAGGGACTGACATATGTAGAAAATGGAGAAGATGTGTTCCCTGTT 683 Query 352 GACGCTGCTGTAGCAGATGTTTCCCCTGTTGACGCTGCTGTAGCAGATGTTTCTCCTGTT 411 || |||| || |||||||||||| |||||||| |||| |||| |||||||||| || || Sbjct 684 GAAGCTGTTGCAGCAGATGTTTCTCCTGTTGAAGCTGTTGTACCAGATGTTTCCCCCATT 743 Query 412 GAA 414 ||| Sbjct 744 GAA 746 Score = 532 bits (288), Expect = 4e-150 Identities = 326/345 (94%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 1729 GAGTGGGAGAAAACACTGCAACTCATAGCTGTCGTTGGCCTCGGTCTGACTATATACCAA 1788 ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | Sbjct 2040 GAGTGGGAGAAAACACTGCAACTCATAGCTGTCATCGGCCTTAGTCTGACTATATACCTA 2099 Query 1789 CGACTTTCTTCATATGATGACTCTGAAGACTTCAAGGAAGACGTCAGGCTGTTGCTTGCA 1848 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 2100 CGACTTTCTTCATATGATGACTCCGAAGACTTCAAACAAGACGTCAGGCTGTTGCTTGCA 2159 Query 1849 CCTGTGAGACTCGGAGCTCAGGCTTTCTCATGGGCTGCAGGAAAACTCGAAACAAATGGT 1908 ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 2160 CCTGTGAAACTCGGAGCTCAGGCTTTCTCGTGGGCTGCAGGAAAACTAGAAACAAATGGT 2219 Query 1909 GTTGGGCTCCCAACATCACCTTCGTCTTCAGATGTTAGAAGCCGGGTTTTGCAAGCTGCT 1968 ||||| |||||||| || ||||| |||||||||||| ||||||||||||||||||||||| Sbjct 2220 GTTGGCCTCCCAACTTCGCCTTCTTCTTCAGATGTTCGAAGCCGGGTTTTGCAAGCTGCT 2279 Query 1969 GCTAAGCATGAATCTAAGCCCTCTGATGAAACATCTGAAAGTCTCCAAGATGCATCATCG 2028 |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 2280 GCTAAGCATGAATCGAAACCCTCTGATGAAACTTCTGAAAGTCTCCAAGATGCATCATCG 2339 Query 2029 TCACCAGAAGAAGCTTTGAACAACGTTGATGTCTCCGAAGCGTAA 2073 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2340 TCACCAGAAGAAGCTTTGAACAACGTTGATGTCTCCGAAGCGTAA 2384 Score = 294 bits (159), Expect = 2e-78 Identities = 187/200 (94%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 1427 AGAGACCATACTTGGTGCAAGGAGGCTTTAGATCATGGGTTA-AGGAAGGTCTTCGTGTG 1485 |||| ||||||||| ||||||| || | ||||||||||| || ||||||||||||||||| Sbjct 1846 AGAGGCCATACTTGATGCAAGGTGGGTATAGATCATGGG-TACAGGAAGGTCTTCGTGTG 1904 Query 1486 AAAGAGCCGAAACCTGAGACAACACTTACCATCCTCAACGAAGAAGCTGAGGCGATTCTT 1545 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 1905 AAAGAGCCAAAACCTGAGACAACACTTACCATCCTCAACGAGGAAGCTGAGGCGATTTTT 1964 Query 1546 GAGGACATAAATCCTTCTCCATTGCAACTAGTTGGAGTTGGTGTGGGTTTTTTCGCAGCA 1605 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1965 GAGGACATAAATCCCTCTCCATTGCAACTATTTGGAGTTGGTGTGGGTTTTTTCGCAGCA 2024 Query 1606 TTGTATGCTTTGTCTG-GTG 1624 |||||||||||||||| ||| Sbjct 2025 TTGTATGCTTTGTCTGAGTG 2044 Score = 117 bits (63), Expect = 4e-25 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 580 TCACTTCCTGATCCTAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGGAGTCCTTC 639 |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 849 TCACTTCCTGATGCGAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGCAGTCCTTC 908 Query 640 AGCTCTTCACTT 651 |||||||||||| Sbjct 909 AGCTCTTCACTT 920 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102760515615 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5