BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898991
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60300.2 | Symbols: | RWD domain-containing protein | chr3:... 636 0.0
> AT3G60300.2 | Symbols: | RWD domain-containing protein | chr3:22285263-22287511
FORWARD LENGTH=1389
Length=1389
Score = 636 bits (344), Expect = 0.0
Identities = 398/425 (94%), Gaps = 0/425 (0%)
Strand=Plus/Plus
Query 139 TTTGTGGAAGCGGTTGTGAGAATCCAATCAAGTTCTAAGTATCCAGATGAACCACCTCGA 198
||||||||||| ||||| ||| ||||| || ||||||||||||||||||||||||||||
Sbjct 298 TTTGTGGAAGCCGTTGTTAGATTCCAAGCAGGTTCTAAGTATCCAGATGAACCACCTCGG 357
Query 199 ATTAGTCTGATTGAATCCAAGGGTCTCGATGAGCAAAGGCAAAAGCATTTGACTGGCATT 258
|||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||
Sbjct 358 ATTAGTCTGATTGAATCCAAGGGTCTTGACGAGCAAAGGCAAAAGCTTTTGATTGGCATA 417
Query 259 GTGCAAGAGAAAGCTTCTCAACTATCATCTTCTTTAATGCTTGTAGAACTTTGTGAGGAA 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTGCAAGAGAAAGCTTCTCAACTATCATCTTCTTTAATGCTTGTAGAACTTTGTGAGGAA 477
Query 319 GCAGTTGAGAGGCTCACAATCATGAATCACCCAGATGGAGATTGTCCACTGTGTTTGTAT 378
||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 478 GCAGTGGAGAGGCTCACAATTATGAATCACCCGGAGGGAGATTGTCCACTGTGTTTGTAT 537
Query 379 CCGTTATTCCCTGAGGAAGACGGGAGTAAACAAATGCCATTTATGAAGCTGATGTCTTGT 438
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCGTTATTCCCTGAGGATGGCGGGAGTAAACAAATGCCATTTATGAAGCTGATGTCTTGT 597
Query 439 TTCCATTGTTTCCACTGTGAGTGCATCATTAGGTGGTGGAATTGGCTTCATGCACAAAAA 498
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 TTTCATTGTTTCCACTGTGAGTGCATCATTAGGTGGTGGAATTGGCTTCATGCACAGGAA 657
Query 499 GATGCTGATTCGAATTCTGGTGACTCTTCACATATGCGTAGAGGATCAAGTACTCGAGAA 558
|| ||||||||||| ||||||||| ||| |||||||||||||||||||| | ||||||||
Sbjct 658 GAGGCTGATTCGAAATCTGGTGACACTTTACATATGCGTAGAGGATCAACTGCTCGAGAA 717
Query 559 GATAA 563
| |||
Sbjct 718 GGTAA 722
Score = 582 bits (315), Expect = 2e-165
Identities = 391/426 (92%), Gaps = 12/426 (3%)
Strand=Plus/Plus
Query 595 GACTCTGGTTTAATACAAGGTGAGGACCAAGACCCGCTGCTCCAGTCAGATTCAGAGAAC 654
|||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 835 GACTCTAGTTTAATACCAGGCAAGGACCAAGACCCGCTGCTCCAGTCAGATTCAGAGAAC 894
Query 655 ATAAGAAGAGAGCGGTTTGAGGCTATTCTAAAGACGCAGGAAGAAATGGGCGGTTTGGTT 714
||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 895 ATAAGAAGAGAGCGGTTTGAGTCTATTCTAAAGACGCAGGAAGAAAAGGGTGGTTTGGTT 954
Query 715 CAACCGAAGAAAAACATATCGGTTGTGCCCGGTATGTATCTTCCTCCACCAGCTCCTGCA 774
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 955 CAACCGAAGAAAAACATATCGGTGGTGCCCGGTATGTATCTTCCTCCACCAGCTCATGCA 1014
Query 775 TCATCGTCACCAAACgaagaagaagaagctggtcaaagccaagaacaaggagaagaagaa 834
||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1015 TCAACGTCACGAAACGAAGAAGAAGAAGCTGGTGAAAGCCAAGAACAAGGAGAAGAGGAA 1074
Query 835 cccaaagaagctgaatcagagaCAAGCTCTAGCAGCTCCAGCAACAGGAGAGGTCGAGGG 894
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1075 CCCAAAGAAGCTGAATCAGAGACAAACTCTAGCAGCTCCACCAACAGGAGAGGTCGAGGG 1134
Query 895 AGA-GG-----CAGAGGC-----C-GAGGCCGGGGACATAGTGTCAATCAAAGGAAGCAG 942
||| || ||||||| | |||||||||||| || ||||||| ||||||||| |
Sbjct 1135 AGATGGAGAGGCAGAGGCAGAAGCAGAGGCCGGGGACCTACTGTCAATGAAAGGAAGCCG 1194
Query 943 AATTCGCAAGATCCAAGAAAACCGATGAGGCAATGGGTGCAGAGAGCCAGAGAAAGTGAC 1002
||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||
Sbjct 1195 AATTCGCAAGATCCAAGAAAACCGACGAGACAATGGGTGCAGAGAGCCAGAGAAGGAGAC 1254
Query 1003 AAATAA 1008
||||||
Sbjct 1255 AAATAA 1260
Score = 222 bits (120), Expect = 4e-57
Identities = 135/142 (95%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 1 ATGACGGAGGAAGAGGTAGCCATGGAAGTGGAAGCTCTAGAAGCAGTTTACGGCGAAGAC 60
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 109 ATGACGGAGGAAGAGGTAGCTATGGAAGTGGAAGCTCTAGAAGCAGTTTACAGCGAAGAC 168
Query 61 TGCGTTATATTGGATTCATATCCTCCTCGTCTTCACCTCCATATCAAGCCCCGTACCGCC 120
||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 169 TGCGTTATACTGGATTCGTATCCTCCTCATCTTCACCTCCATATCAAGCCCCGTACCGCC 228
Query 121 GAGATCTCTTCTCAGCAG-TTT 141
|| ||||||||||||||| |||
Sbjct 229 GAAATCTCTTCTCAGCAGGTTT 250
Score = 69.4 bits (37), Expect = 6e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 558 AGATAAAAGCTTGGGAAACTGTCCAGTGTGCCGCAAA 594
|||||||||||||||||||||||||||||||||||||
Sbjct 735 AGATAAAAGCTTGGGAAACTGTCCAGTGTGCCGCAAA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5