BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899011
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60470.1 | Symbols: | Plant protein of unknown function (DU... 2283 0.0
> AT3G60470.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr3:22344813-22347121 FORWARD LENGTH=1860
Length=1860
Score = 2283 bits (1236), Expect = 0.0
Identities = 1508/1637 (92%), Gaps = 28/1637 (2%)
Strand=Plus/Plus
Query 1 ATGAACCGAAGGTTGAATCATGAACCGGACACGGTCCTTGAGTTAAACAAATCGACTCCA 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGAACCGAAGGTTGAATCATGAACCGGACACGGTCCTTGAGTTAAACGAATCGACTCCT 60
Query 61 GGGATATGGTGGTTTCCTACAAATCCTGAGCATCGTTGCATCTACCGAGTCCCTCATCGT 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 61 GGGATGTGGTGGTTTCCTACAAATCCTGAGCATCGTTGCATCTACCGAGTCCCTGACCGT 120
Query 121 CTACGTCGTGTAAATCCAGAAGCATACACGCCTCAATTACTTCTCATTGGACCTCTTCAC 180
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTACGTCGTGTAAATCCAGAAGCTTACACGCCTCAATTACTCCTCATTGGACCTCTTCAC 180
Query 181 CATTCTTTAAAATCTCAAGCTCTCATGTCTAGTGGAGATATCACAAACACAAAGTTAATG 240
||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 181 CATTCTTTAAAATTTCAAGCTCTCAACTCTCGTGGAGATATCACAAACACAAAGTTAATG 240
Query 241 GGCTACTTAAACATGGAGGAGCATAAAAAGATTTACCTCGCGAGATTCTCGGAAAAGCTT 300
|||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||
Sbjct 241 GGCTACTTAAACATGGAGGAGCATAAGAAGATTTACCTTGCGAGATTCTCAGAAAGGCTT 300
Query 301 GGAGGGaaaaaaaCCATTGATGAATTCAGAAGAATAATCAAAGAAGACGAAGATATAATC 360
| ||| ||||||| ||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 301 GCAGGTCAAAAAACGATTGATGAACTCAGAAGAAGAATCAAAGAAGAAGAAGATATAATA 360
Query 361 AGGGCATGCTACTCTGAATCAACTGCCTGGATCGAATCTTCAAAGTTCGTGGATATGATC 420
|||||| |||||||||| |||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 361 AGGGCAAGCTACTCTGAGTCAACTGCCTGGATTGAATCTCCAAAGTTCGTGGACATGATC 420
Query 421 CTACATGACTCTGTTTTCATAATAGAGTTCATGTTAAGGAGTAAAGAGTACATCTTACTT 480
||||| |||||||||||||||||||||||| | |||||||||||||| |||| |||||||
Sbjct 421 CTACACGACTCTGTTTTCATAATAGAGTTCCTTTTAAGGAGTAAAGATTACACCTTACTT 480
Query 481 GAGGACCAAGGATCA-GATATCAAGAAAACATGGGATCCTATATTTGAGCAGCCTTGTCT 539
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGGACCAAGGATCATGC-ATCAAGAAAACATGGGATCCTATATTTGAGCAGCCTTGTCT 539
Query 540 TCAAACCACTGTGGATGAAGACCTCATTTTGCTCGAGAACCAGCTTCCTTACTTCATCCT 599
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 540 TCAAACTACTGTGGATGAAGACCTCATTTTGCTCGAGAATCAACTTCCTTACTTCATCCT 599
Query 600 CGAGAAACTCTTCGATCCAATAGTTCCAATACTCCGTCCAGACCAGACACTCCGCAAGTT 659
||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||| || |
Sbjct 600 CGAGAAACTCTTCGATCCAATCGTTCCAATACTCCGCCCAAACCAAACACTCCGCCAGAT 659
Query 660 AATCATCACTTACTTCAGATTCCAAGGTAATATCAGAGATGACTCCAGATTCAAACATTT 719
| |||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||
Sbjct 660 AGTCATCACTTACTTCAGATTCCAAGGTAATATCGGAGTTGACTCCAGATTTAGACATTT 719
Query 720 CACTGATCTATTCCGATGTGTCCGCGTGGAGACACTTAGGCCAAAGAAACCAAAGAATAA 779
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 CACTGATCTATTCCGATGTGTCCGCGTGGAGACACTTAGGCCAAAGATGCCAAAGAATAA 779
Query 780 ATTCAGATATTTAGCTGGTCTGTTCCGATTTTTTCGCTTGGGAACACAGGGGTCATCAGG 839
|||||||||||||| |||||||||||||||| | | ||||||||||| |||||| ||
Sbjct 780 ATTCAGATATTTAGTTGGTCTGTTCCGATTTGTCCATTTGGGAACACACGGGTCA--AG- 836
Query 840 AGAATTAGAAAAGAGTCGTCCTCAAGAACATAAAGCTCTTCCCATGGAGAAGACACATGG 899
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 837 AGAATTAGAAAAGAGTCGTCCTCAAGAACATAAAGCTCTTCGCATGGAGAAGACACATGG 896
Query 900 GTCAGGAGAACCAACAAAGAGCAAATTCAGATACATAGCTGATCTTTTCCGATGTGTTCC 959
||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 897 GTCAGGAGAACCAACAAAGAGCACATTCAGATATATAGCTGATCTTTTCCGGTGTGTTCC 956
Query 960 CATGGAGACACAAGGGTCAAAAAGAGAAACAGAAAAGAGTCGTAGTCTTGAACGGCTCAA 1019
|||||||||| ||| || ||||||||| |||||||||||| |||||||| |||||
Sbjct 957 GATGGAGACACTAGGTTCGAAAAGAGAA---GAAAAGAGTCGT---CTTGAACGACTCAA 1010
Query 1020 AACTCATCGCATGAAGGAGACGTCACATGGTCATGGGTCaaaaaaaCCAAAAGATCCCCC 1079
||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| | ||
Sbjct 1011 AACTCATCGCATGGAGGAGACGTCACATGGTCATGGCTCAAAAAAAACAAAAGAGCTACC 1070
Query 1080 GATCATCAAACACATGTATAACGCGGCAAAGCTATACAGTGCAGGAGTGAAGTTCAAGGC 1139
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1071 GATCATCAAACACATGTATAACGCGGCAAAGCTACAAAGTGCAGGAGTGAAGTTCAAGGC 1130
Query 1140 TGTGACAGATGAGTTCTCGATAGATGTGAAATTCGAGAATGGTTGTTTGAAGATACCTTG 1199
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1131 CGTGACAGATGAGTTCTCGATAGATGTGACATTTGAGAATGGTTGTTTGAAGATACCTTG 1190
Query 1200 TTTGTGGGTTCCTGATGATGCGGAGATCACATTAAGAAATATAATGGCGCTAGAGCAATG 1259
||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||
Sbjct 1191 TTTGTGGGTTCCTGATGATGCAGAGATCACACTGAGAAATATAATGGCGCTTGAGCAATG 1250
Query 1260 CCATTACCCTTTCAAAGCCTACGTCTGTAACTTCGTCAGTTTCTTGGATTTCCTCATAGA 1319
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1251 CCATTACCCTTTCAAAGCATACGTCTGTAACTTCGTCAGTTTCTTGGATTTCCTCATCGA 1310
Query 1320 CACTGATAAAGACGTCGACTTGCTCATGGAGAACGGGTATGGTTTTGAAAGGGATACTAA 1379
||||||||||||||| ||||| ||||||||||||||| || | ||||
Sbjct 1311 CACTGATAAAGACGTGGACTTACTCATGGAGAACGGG-AT-------A--------CTAA 1354
Query 1380 ACAACTGGGGG-AGAAGAGTTCGGTGGCGGTGGCGGAGATGGTGAACACGCTCTTTTCGG 1438
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1355 ACAACTGGGGGGAGAAGAGTTCTGTGGCGGTGGCGGAGATGGTGAACACGCTATTTTCGG 1414
Query 1439 GCGTCGTGGAGAGTCGTTCTTACTATGCTGGTATTGCGTCAAGAGTCAACGCCTATTATG 1498
| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1415 GGGTGGTGGAGAGTCGTTCTTACTATGCTGGTATAGCGTCTAGAGTCAACGCCTATTATG 1474
Query 1499 AAAATCCAGTCAACAGGACACGCACCATCCTGGGACGCCAGTATTTCGGTAATCTATGGA 1558
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1475 AAAATCCAGTCAACAGGTCACGCACCATCCTCGGACGCCAGTATTTCGGTAATCTATGGA 1534
Query 1559 GAGGTACGGCTACTATCGCTGCTGGGCTTCTTTTGCTGATGACTTTTGTCCAGACGGTGG 1618
||||||| |||||| |||| |||| |||||||||| |||||||| || ||||||||||||
Sbjct 1535 GAGGTACCGCTACTGTCGCCGCTGCGCTTCTTTTGGTGATGACTCTTATCCAGACGGTGG 1594
Query 1619 CTTCGATTATTCAGGTT 1635
|||| ||| ||||||||
Sbjct 1595 CTTCTATTCTTCAGGTT 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5