BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899151
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36000.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 318 2e-86
AT3G61730.1 | Symbols: RMF | reduced male fertility | chr3:2284... 296 7e-80
AT5G36001.1 | Symbols: | RING/U-box superfamily protein | chr5... 265 2e-70
AT3G62500.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 167 6e-41
> AT5G36000.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: reduced male fertility (TAIR:AT3G61730.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14139996-14141892
FORWARD LENGTH=1068
Length=1068
Score = 318 bits (172), Expect = 2e-86
Identities = 184/190 (97%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 107 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTGAAGCAGTTA 166
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 878 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTA 937
Query 167 TCGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAAGAAAACGAAGGAATACTTGTGA 226
| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 938 TTGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAACAAAACGAAGGAATCCTTGTGA 997
Query 227 AGTACCACACAATGAAAGCAAGAACAGACGGTGACATTGTTTCCATAAGAATCTCCCAGC 286
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 998 AGTACCACACAATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGC 1057
Query 287 AGCTTCTCTG 296
||||||||||
Sbjct 1058 AGCTTCTCTG 1067
> AT3G61730.1 | Symbols: RMF | reduced male fertility | chr3:22848427-22850475
REVERSE LENGTH=1065
Length=1065
Score = 296 bits (160), Expect = 7e-80
Identities = 180/190 (95%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 107 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTGAAGCAGTTA 166
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 875 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGTCAAATGATTCCCAACCTAAAGCAGTTA 934
Query 167 TCGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAAGAAAACGAAGGAATACTTGTGA 226
|||||||||| || |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 935 TCGCACCCCACGCTGTTGCTGTTCACACAAGACTGCAAGAAAACGAAGGAATCCTTGTGA 994
Query 227 AGTACCACACAATGAAAGCAAGAACAGACGGTGACATTGTTTCCATAAGAATCTCCCAGC 286
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 995 AGTACCACACAATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGC 1054
Query 287 AGCTTCTCTG 296
| ||||||||
Sbjct 1055 AACTTCTCTG 1064
> AT5G36001.1 | Symbols: | RING/U-box superfamily protein | chr5:14141641-14143436
FORWARD LENGTH=1581
Length=1581
Score = 265 bits (143), Expect = 2e-70
Identities = 155/161 (96%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 136 GAGGCAGATGATTCCCAACCTGAAGCAGTTATCGCACCCCATGCAGTTGCTGTTCACACA 195
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAGGCAGATGATTCCCAACCTAAAGCAGTTATTGCACCCCATGCAGTTGCTGTTCACACA 60
Query 196 AGATTGCAAGAAAACGAAGGAATACTTGTGAAGTACCACACAATGAAAGCAAGAACAGAC 255
||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 61 AGATTGCAACAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGCAGGAACAGAC 120
Query 256 GGTGACATTGTTTCCATAAGAATCTCCCAGCAGCTTCTCTG 296
||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 GGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTG 161
> AT3G62500.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SET domain protein 14 (TAIR:AT3G61740.1); Has 66 Blast
hits to 66 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:23120423-23122222
FORWARD LENGTH=1125
Length=1125
Score = 167 bits (90), Expect = 6e-41
Identities = 103/109 (94%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 107 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGA-TTCCCAACCTGAAGCAGTT 165
||||||||||||||||||||||||||||| || ||||| | |||||||||| ||||||||
Sbjct 854 GTATTCTCAACCTCAAGTCTTGGACCGGACAGCCAGAT-ATTTCCCAACCTAAAGCAGTT 912
Query 166 ATCGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAAGAAAACGAAG 214
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 913 ATCGCACCCCATGCAGTTGCTGTTCACACAAGATTGCGAGAAAACGAAG 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13873898724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5