BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899203
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62120.1 | Symbols: | Class II aaRS and biotin synthetases ... 2638 0.0
> AT3G62120.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr3:23001030-23004321 REVERSE LENGTH=1938
Length=1938
Score = 2638 bits (1428), Expect = 0.0
Identities = 1513/1555 (97%), Gaps = 2/1555 (0%)
Strand=Plus/Plus
Query 16 gaaaagaaagaaaaggttaagaaagaaaaggttgtgaaagaaaaggttgcaaaggCTTCT 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GAAAAGAAAGAAAAGGTTAAGAAAGAAAAGGTTGTGAAAGAAAAGGTTGCAAAGGCTTCT 247
Query 76 TCTAGTGGACAGAAGAAGAAGGACGTCAAGAAGGAAACGGGTCTTGGACTCAGCGTTAAG 135
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 248 TCGAGTGGACAGAAGAAGAAGGACGTCAAGAAGGAAACGGGTCTCGGACTCAGTGTTAAG 307
Query 136 AAAGATGAGAATTTCGGGGACTGGTATTCTGAGGTTTGTAAACAAGATATGATTGAGTAC 195
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 308 AAAGATGAGAACTTCGGGGAATGGTATTCTGAGGTTTGTAAACAAGATATGATTGAGTAC 367
Query 196 TATGATATCTCTGGATGTTATATTCTTA-GGCCATGGTCCATGGCCATTTGGGAGATTAT 254
|| |||||||||||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 368 TACGATATCTCTGGATGTTATATTC-TACGGCCATGGTCAATGGCCATTTGGGAGATTAT 426
Query 255 GCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTCAAGAATTGCTATTTCCCTCT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTCAAGAATTGCTATTTCCCTCT 486
Query 315 GTTTGTATCTCCTGCTGTCTTAGAGAAGGAGAAGGACCACATTGAGGGATTCGCCCCAGA 374
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 487 GTTTGTATCTCCTGGTGTCTTAGAAAAGGAGAAGGACCACATCGAGGGATTCGCCCCTGA 546
Query 375 GGTTGCTTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAATCCCAATTGCTATTCGTCC 434
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 547 GGTTGCGTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAGTCCCAATTGCTATTCGTCC 606
Query 435 AACCAGTGAGACTGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCACCGTGACTT 494
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AACCAGTGAGACAGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCACCGTGACTT 666
Query 495 GCCTTTGAAACTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCC 554
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCCTTTGAAGCTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCC 726
Query 555 ATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGGTCACACTGCATTCGCCACGAAAGC 614
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 727 ATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGGTCACACTGCATTCGCCACAAAAGC 786
Query 615 AGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATA 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATA 846
Query 675 TCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGGGGACT 734
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 847 TCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTGGACT 906
Query 735 TTACACTACAAGTGTAGAGGCCTTCATTCCAAACACTGGTCGTGGTGTACAAGGTGCAAC 794
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 907 TTACACTACAAGTGTAGAGGCTTTCATTCCAAACACTGGTCGTGGTGTACAAGGTGCAAC 966
Query 795 CTCTCACTGTTTGGGTCAAAACTTTGCGAAGATGTTTGAGATCAACTATGAGAATGAAAA 854
|||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 967 CTCTCATTGTTTGGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAA 1026
Query 855 AGCAGAGACAGCAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGATTGGAGT 914
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGATTGGAGT 1086
Query 915 GATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGT 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGT 1146
Query 975 GCAAGTTGTTGTGATCCCTGTACCCTACAAAGATGCTAATACCCAAGGAATTTATGATGC 1034
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GCAAGTTGTTGTGATTCCTGTTCCCTACAAAGATGCTAATACCCAAGGAATTTATGATGC 1206
Query 1035 TTGTACTGCTACTGCATCTGCCTTGTGTGAAGCCGGTATCCGTGCTGAAGAAGATTTAAG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TTGTACTGCTACTGCATCTGCCTTGTGTGAAGCCGGTATCCGTGCTGAAGAAGATTTAAG 1266
Query 1095 GGACAACTACTCTCCTGGATGGAAGTATTCAGACTGGGAAATGAAGGGTGTTCCATTGAG 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GGACAACTACTCTCCTGGATGGAAGTATTCAGACTGGGAAATGAAGGGTGTTCCATTGAG 1326
Query 1155 GATTGAGATTGGTCCCAGAGACCTGGAAAATGATCAGGTCAGAACTGTGAGACGTGACAA 1214
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1327 GATTGAGATTGGTCCCAGAGACCTAGAAAATGATCAGGTCAGAACTGTGAGACGTGACAA 1386
Query 1215 CGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTCGAAAATGTTAAGGAACTGCTTGA 1274
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1387 CGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTCGAACATGTTAAGGAACTGCTTGA 1446
Query 1275 GAAGATCCAGCAAAACATGTATGAAGTTGCGAAGCAAAAGAGGGAAGCATGTGTTCAAGA 1334
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1447 AAAGATCCAGCAAAACATGTATGAAGTTGCTAAGCAAAAGAGGGAAGCATGTGTTCAAGA 1506
Query 1335 GGTAAAGACTTGGGATGAGTTTATCAAAGCACTTAACGAAAAGAAACTCATCTTAGCTCC 1394
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1507 GGTAAAGACTTGGGATGAGTTTATCAAAGCTCTTAACGAAAAGAAACTCATTTTGGCTCC 1566
Query 1395 CTGGTGTGATGAAGAGGGAGTGGAGAGAGATGTGAAGGCACGTACTAAAGGTGAAACTGG 1454
||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||| ||
Sbjct 1567 CTGGTGTGATGAAGAGGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGG 1626
Query 1455 AGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCCAGAACTCCCTGAAGGCACTCTCTG 1514
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1627 AGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCCTGAACTCCCTGAAGGCACTCTCTG 1686
Query 1515 CTTTGCTTCAGGAAAGCCTGCCAAGAAATGGACCTATTGGGGCAGGAGTTACTAA 1569
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1687 CTTTGCTTCAGGAAAACCTGCAAAGAAATGGACCTATTGGGGCAGGAGTTACTAA 1741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5