BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg899620 Length=543 Score E Sequences producing significant alignments: (Bits) Value AT2G23130.1 | Symbols: AGP17, ATAGP17 | arabinogalactan protein... 501 3e-141 > AT2G23130.1 | Symbols: AGP17, ATAGP17 | arabinogalactan protein 17 | chr2:9844350-9845385 FORWARD LENGTH=818 Length=818 Score = 501 bits (271), Expect = 3e-141 Identities = 477/570 (84%), Gaps = 39/570 (7%) Strand=Plus/Plus Query 1 ATGACTCGCAAAATTCTCTTAACAGTTACATTGATCTGCATTGTATCTC-TCGGTGTCGG 59 ||||||||||| |||||||| || |||||||||||||||||||| | || || ||||| Sbjct 62 ATGACTCGCAATATTCTCTTGACGGTTACATTGATCTGCATTGT-TTTCATCACCGTCGG 120 Query 60 TGGCCAATCTCCGGCCACCGCACCGAGCCATTCTCCTTCTATATCTCCTCAAAAGCCTAA 119 |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 121 TGGCCAATCTCCGGCCACCGCACCGATCCATTCTCCTTCTACATCTCCTCATAAGCCTAA 180 Query 120 AGCCACATCTCCCGCCATTTCTCCATCTCCGGAATTAACTCCC-A--CGACGGAGGCTCC 176 | ||||||||||||||||||||||| || | | | | || | | ||||||||||| Sbjct 181 ACCCACATCTCCCGCCATTTCTCCAGCTGCTCCA--A-CGCCGGAATCCACGGAGGCTCC 237 Query 177 GACGCAGACTCCAGTAGAACCACCCGTCGAGGCTCCTCCTTCTCCTACACCTGAGGCT-- 234 | || ||||||| |||||| |||| || ||||||||||||||||||||||||| || Sbjct 238 GGCGAAGACTCCGGTAGAAGCACCTGTAGAGGCTCCTCCTTCTCCTACACCTGCTTCTAC 297 Query 235 ---TC---T-TCTCCGCCTGGTCCTTCACCGGAGGCTGATACACCTTCTGCTCCGGTGGA 287 || | |||||||| | ||||||||||||||||||||| ||||| ||||||| | | Sbjct 298 ACCTCAGATCTCTCCGCCCGCTCCTTCACCGGAGGCTGATACTCCTTCAGCTCCGGAG-A 356 Query 288 T-GCGCCAACAGCTGACGTCCCGGCTCCAGCTCCGAGCAAA-CATAAGAAGAAG-C---G 341 | || || ||||||| || ||||||||||||| || |||| |||||||||||| | | Sbjct 357 TTGCACCTTCAGCTGATGTTCCGGCTCCAGCTCTGA-CAAAACATAAGAAGAAGACAAAG 415 Query 342 -----TAAGACCGCCCCGGCTCCCGGACCAGCTTCGGAGATTTTAAGCCCGCCTGCTCCG 396 ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 416 AAGCATAAGACCGCTCCGGCTCCTGGACCAGCTTCGGAGCTTTTAAGCCCGCCTGCTCCG 475 Query 397 CCCGGGGAAGCTCCTGGTCCTGGACCAAGTGATGCTTTCTCCCCCACCGCCGACGATCAG 456 ||||| ||||||||||||||||||||||| ||||||||||| || |||| ||||||||| Sbjct 476 CCCGGAGAAGCTCCTGGTCCTGGACCAAGCGATGCTTTCTCTCCTGCCGCTGACGATCAG 535 Query 457 AGCGGAGCAGAAAAAAGAAGTGT-G--ATACAAAATGTGATGGTGGGAGCTGTGGCAATC 513 ||||||||| ||| || |||||| | ||||||| || | ||| | ||||| ||||||| Sbjct 536 AGCGGAGCACAAAGAATAAGTGTTGTGATACAAA-TG-G-TGG-G--AGCTGCGGCAATC 589 Query 514 GCATGGCCTCTACTTGCTCTAGCCTTCTAA 543 |||||| ||||||||| ||||||||||||| Sbjct 590 GCATGGTCTCTACTTGTTCTAGCCTTCTAA 619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26021288146 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5