BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg899725 Length=549 Score E Sequences producing significant alignments: (Bits) Value AT2G24020.1 | Symbols: | Uncharacterised BCR, YbaB family COG0... 870 0.0 AT4G30620.1 | Symbols: | Uncharacterised BCR, YbaB family COG0... 433 1e-120 > AT2G24020.1 | Symbols: | Uncharacterised BCR, YbaB family COG0718 | chr2:10217701-10219352 REVERSE LENGTH=800 Length=800 Score = 870 bits (471), Expect = 0.0 Identities = 524/550 (95%), Gaps = 2/550 (0%) Strand=Plus/Plus Query 1 ATGGCGTCGATGGCTGCGACCACCAATTTCACCAAATCTTTACTCTTTCCTTTCTCTCAT 60 ||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||| Sbjct 84 ATGGCGTCGATGGCTGCAACCACCAATTTCACCAAATCTATGCTCTTTCCATTCTCTCAT 143 Query 61 GTTTCAGGAAATGCGAGCTTGAATTCACAGAGAGGTACATGGCCAAAGCA-TCAAAAGTC 119 |||||||||||||||||||||||||| |||||| | |||||||||||||| | | ||||| Sbjct 144 GTTTCAGGAAATGCGAGCTTGAATTCGCAGAGAAGAACATGGCCAAAGCAGT-ACAAGTC 202 Query 120 TAAAAATGGTTATAGGTCTCTTCGTGTCAATGGATTATTCGGTGGTGGAAACAAAGATAA 179 |||||||||||| ||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct 203 TAAAAATGGTTACAGGTCTCTTCGAGTGAATGGATTATTTGGAGGTGGAAACAAAGATAA 262 Query 180 TAACAGTGAAGATGGACAATCAAAGGCAGGGATATTTGGTAATATGCAGAATATGTATGA 239 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 263 TAACAGTGAAGATGGACAATCAAAGGCAGGAATATTTGGTAATATGCAGAATATGTATGA 322 Query 240 GACTGTGAAGAAAGCTCAAATGGTTGTTCAAGTCGAAGCTGTACGTGTCCAAAAAGAGTT 299 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 323 GACTGTGAAGAAAGCTCAAATGGTTGTTCAAGTGGAAGCTGTACGTGTTCAAAAAGAGTT 382 Query 300 AGCTGCCGCAGAATTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGTTACGTTATCAGG 359 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 383 AGCTGCCGCAGAATTTGATGGTTATTGTGCAGGCGAGCTTGTCAAGGTTACGTTATCAGG 442 Query 360 TAACCAGCAACCAATCCGTACTGATATAACCGAGGCAGCAATGGAATTAGGTTCTGAAAA 419 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| Sbjct 443 TAACCAGCAACCAATCCGTACTGATATTACCGAGGCAGCAATGGAACTAGGTTCCGAAAA 502 Query 420 ACTGTCACAACTTGTCACAGAAGCATACAAGGACGCACACGCGAAGAGTGTGGTGGCTAT 479 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 503 ACTATCACAACTTGTCACAGAAGCATACAAGGACGCACACGCCAAGAGTGTGGTGGCTAT 562 Query 480 GAAAGAGAGAATGAGTGACCTTGCGCAGAGCTTAGGCATGCCACCGGGTCTCAGCGAAGG 539 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 563 GAAAGAGAGAATGAGTGACCTTGCGCAGAGCTTAGGAATGCCACCGGGTCTCAGCGAAGG 622 Query 540 ACTGAAGTAA 549 | |||||||| Sbjct 623 AATGAAGTAA 632 > AT4G30620.1 | Symbols: | Uncharacterised BCR, YbaB family COG0718 | chr4:14948586-14950072 REVERSE LENGTH=718 Length=718 Score = 433 bits (234), Expect = 1e-120 Identities = 343/394 (87%), Gaps = 13/394 (3%) Strand=Plus/Plus Query 136 TCTCTTCGTGTCAATGGATTATTCGGTGGTGGAAACAAA-GATAATAACAGTGAAGATGG 194 ||||||||||| |||||||||||||| || ||||| ||| || ||||| | || ||||| Sbjct 173 TCTCTTCGTGTTAATGGATTATTCGGAGGCGGAAA-AAAGGACAATAA-A--GAGGATGG 228 Query 195 ACAATCAAAGGCAGGGATATT-T-GGTAATATGCAGAATATGTATGAGACTGTGAAGAAA 252 ||||||||||||| ||| ||| | ||||| ||||||||| |||||||||| ||||||||| Sbjct 229 ACAATCAAAGGCA-GGA-ATTCTAGGTAACATGCAGAATTTGTATGAGACAGTGAAGAAA 286 Query 253 GCTCAAATGGTTGTTCAAGTCGAAGCTGT-ACGTGTCCAAAAAGAG-TTAGCTGCCGCAG 310 |||||||||||||||||||| || ||||| | | || || || ||| || |||| || | Sbjct 287 GCTCAAATGGTTGTTCAAGTAGAGGCTGTTA-GAGTGCAGAAGGAGCTT-GCTGTTGCTG 344 Query 311 AATTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGTTACGTTATCAGGTAACCAGCAAC 370 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 345 AATTTGATGGTTATTGTCAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAAC 404 Query 371 CAATCCGTACTGATATAACCGAGGCAGCAATGGAATTAGGTTCTGAAAAACTGTCACAAC 430 |||| || |||||||| || || ||||||||||| ||||||||||||||||| |||| | Sbjct 405 CAATTCGCACTGATATCACTGATGCAGCAATGGAGTTAGGTTCTGAAAAACTTTCACTGC 464 Query 431 TTGTCACAGAAGCATACAAGGACGCACACGCGAAGAGTGTGGTGGCTATGAAAGAGAGAA 490 | ||||||||||||||||| |||||||| | |||||||| ||||||||||||| |||| Sbjct 465 TGGTCACAGAAGCATACAAAGACGCACATTCAAAGAGTGTACTGGCTATGAAAGAAAGAA 524 Query 491 TGAGTGACCTTGCGCAGAGCTTAGGCATGCCACC 524 ||||||| ||||||||||||||||| |||||||| Sbjct 525 TGAGTGATCTTGCGCAGAGCTTAGGGATGCCACC 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26322693028 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5