BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900074

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03930.2 | Symbols:  | Protein of Unknown Function (DUF239) ...  58.4    2e-07


> AT2G03930.2 | Symbols:  | Protein of Unknown Function (DUF239) 
| chr2:1204920-1206249 REVERSE LENGTH=495
Length=495

 Score = 58.4 bits (31),  Expect = 2e-07
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  595  AATCTTAACAGCATTGAAGCTGGTTGGCAGGTTT  628
            ||||| ||||||||||||||||||||||||||||
Sbjct  271  AATCTCAACAGCATTGAAGCTGGTTGGCAGGTTT  304



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59236643100


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5