BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900167
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26250.1 | Symbols: FDH, KCS10 | 3-ketoacyl-CoA synthase 10 ... 2687 0.0
> AT2G26250.1 | Symbols: FDH, KCS10 | 3-ketoacyl-CoA synthase 10
| chr2:11170418-11173142 REVERSE LENGTH=2117
Length=2117
Score = 2687 bits (1455), Expect = 0.0
Identities = 1588/1654 (96%), Gaps = 2/1654 (0%)
Strand=Plus/Plus
Query 1 ATGGGTAGATCCAACGAGCAAGATCTACTCTCTACCGAGATCGTCAACCGTGGGATCGAA 60
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 84 ATGGGTAGATCCAACGAGCAAGATCTGCTCTCTACCGAGATCGTTAATCGTGGGATCGAA 143
Query 61 CCATCCGGTCCTAACGCCGGTTCACCAACGTTCTCGGTCAGGGTCCGGAGACGTTTGCCG 120
|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 144 CCATCCGGTCCTAACGCCGGCTCACCAACGTTCTCGGTTAGGGTCAGGAGACGTTTGCCT 203
Query 121 GATTTTCTTCAGTCGGTGAACTTGAAGTACGTGAAACTTGGTTACCACTACCTCATAAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GATTTTCTTCAGTCGGTGAACTTGAAGTACGTGAAACTTGGTTACCACTACCTCATAAAC 263
Query 181 CATGCGGTTTATTTGGCGACCATACCAGTTCTTGTGCTGGTTTTTAGTGCTGAGGTTGGA 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 264 CATGCGGTTTATTTGGCGACCATACCGGTTCTTGTGCTGGTTTTTAGTGCTGAGGTTGGG 323
Query 241 AGTTTAAGCAGAGAAGAGATTTGGAAGAAGCTTTGGGACTACGATCTTGCAACTGTCATC 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 324 AGTTTAAGCAGAGAAGAGATTTGGAAGAAGCTTTGGGACTATGATCTTGCAACTGTTATC 383
Query 301 GGATTCTTCGGTGTCTTTGTCTTAACCGCTTGTGTCTACTTCATGTCTCGTCCTCGTTCT 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 384 GGATTCTTCGGTGTCTTTGTTTTAACCGCTTGTGTCTACTTCATGTCTCGTCCTCGCTCT 443
Query 361 GTTTATCTTATTGATTTCTCTTGTTACAAGCCCTCCGATGAACTCAAGGTGACAAAAGAA 420
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 444 GTTTATCTTATTGATTTCGCTTGTTACAAGCCCTCCGATGAACACAAGGTGACAAAAGAA 503
Query 421 GAGTTCATAGAATTAGCGAGAAAATCAGGAAAGTTCGACGAAGAGACACTCGGTTTCAAG 480
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 504 GAGTTCATAGAACTAGCGAGAAAATCAGGGAAGTTCGACGAAGAGACACTCGGTTTCAAG 563
Query 481 AAGAGGATCTTACAAGCTTCAGGCATAGGCGACGAGACATACGTCCCAAGATCCATCTCT 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 AAGAGGATCTTACAAGCCTCAGGCATAGGCGACGAGACATACGTCCCAAGATCCATCTCT 623
Query 541 TCATCGGAAAACATAACAACGATGAAAGAAGGTCGTGAAGAAGCCTCAACAGTGATCTTT 600
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 624 TCATCAGAAAACATAACAACGATGAAAGAAGGTCGTGAAGAAGCCTCTACAGTGATCTTT 683
Query 601 GGAGCACTAGACGAGCTCTTCGAGAAGACACGTGTCAAACCTAAAGACGTTGGTGTCCTT 660
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 684 GGAGCACTAGACGAACTCTTCGAGAAGACACGTGTAAAACCTAAAGACGTTGGTGTCCTT 743
Query 661 GTGGTTAACTGTAGCATCTTT-AACCCGACACCGTCGTTGTCCGCAATGGTGATTAACCA 719
||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 744 GTGGTTAACTGTAGCAT-TTTCAACCCGACACCGTCGTTGTCCGCAATGGTGATAAACCA 802
Query 720 TTACAAGATGAGAGGGAACATACTTAGTTACAACCTTGGAGGGATGGGATGTTCTGCTGG 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 803 TTACAAGATGAGAGGGAACATACTTAGTTACAACCTTGGAGGGATGGGATGTTCGGCTGG 862
Query 780 AATCATAGCTGTTGATCTTGCTCGTGACATGCTTCAGTCTAACCCTAATAGTTACGCTGT 839
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 863 AATCATAGCTATTGATCTTGCTCGTGACATGCTTCAGTCTAACCCTAATAGTTATGCTGT 922
Query 840 TGTTGTGAGTACTGAGATGGTTGGGTATAATTGGTACGTGGGACGTGACAAGTCAATGGT 899
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 923 TGTTGTGAGTACTGAGATGGTTGGGTATAATTGGTACGTGGGAAGTGACAAGTCAATGGT 982
Query 900 TATACCTAATTGCTTCTTTAGAATGGGTTGTTCTGCCGTTATGCTCTCTAACCGCCGTCG 959
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 983 TATACCTAATTGTTTCTTTAGGATGGGTTGTTCTGCCGTTATGCTCTCTAACCGTCGTCG 1042
Query 960 TGACTTTCGCCATGCTAAGTACCGTCTCGAGCACATTGTCCGGACTCATAAGGCTGCCGA 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1043 TGACTTTCGCCATGCTAAGTACCGTCTCGAGCACATTGTCCGAACTCATAAGGCTGCTGA 1102
Query 1020 CGACCGTAGCTTCAGGAGTGTGTACCAGGAAGAAGATGAACAAGGATTCAAGGGGTTGAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CGACCGTAGCTTCAGGAGTGTGTACCAGGAAGAAGATGAACAAGGATTCAAGGGGTTGAA 1162
Query 1080 AATAAGTAGAGACTTAATGGAAGTTGGAGGTGAAGCTCTTAAGACCAACATCACTACCTT 1139
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1163 GATAAGTAGAGACTTAATGGAAGTTGGAGGTGAAGCTCTCAAGACAAACATCACTACCTT 1222
Query 1140 AGGCCCTCTTGTTCTCCCTTTCTCCGAACAGCTTCTCTTCTTTGCTGCTTTGCTCCGCCG 1199
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1223 AGGTCCTCTTGTCCTACCTTTCTCCGAGCAGCTTCTCTTCTTTGCTGCTTTGCTCCGCCG 1282
Query 1200 AACTTTCTCACCTGCGGCCAAAACCTCCACAACCACCTCCTTCTCTTCTTCGGCCACAGC 1259
||| ||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||| ||
Sbjct 1283 AACATTCTCACCTGCTGCCAAAACGTCCACAACCACTTCCTTCTCTACTTCCGCCACCGC 1342
Query 1260 TAAAACCAATGGAATCAAGTCTTCCTCTTCCGATCTGTCCAAGCCATACATCCCCGACTA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1343 AAAAACCAATGGAATCAAGTCTTCCTCTTCCGATCTGTCCAAGCCATACATCCCGGACTA 1402
Query 1320 CAAGCTCGCCTTCGAGCACTTCTGCTTCCACGCGGCAAGCAAAGTAGTGCTTGAGGAGCT 1379
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1403 CAAGCTCGCCTTCGAGCATTTTTGCTTCCACGCGGCAAGCAAAGTAGTGCTTGAAGAGCT 1462
Query 1380 TCAGAAGAATCTAGGCTTGAGTGAAGAGAACATGGAGGCTTCAAGGATGACACTTCACAG 1439
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1463 TCAAAAGAATCTAGGCTTGAGTGAAGAGAATATGGAGGCTTCTAGGATGACACTTCACAG 1522
Query 1440 GTTTGGAAACACTTCTAGCAGTGGAATCTGGTACGAGCTGGCTTACTTGGAAGCCAAGGA 1499
||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||||||
Sbjct 1523 GTTTGGAAACACTTCTAGCAGTGGAATCTGGTATGAGTTGGCTTACATGGAGGCCAAGGA 1582
Query 1500 AAGTGTTCGTAGAGGCGATAGGGTTTGGCAGATCGCGTTCGGGTCAGGTTTTAAGTGTAA 1559
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1583 AAGTGTTCGTAGAGGCGATAGGGTTTGGCAGATCGCTTTCGGTTCTGGTTTTAAGTGTAA 1642
Query 1560 CAGTGTGGTGTGGAAGGCAATGAAGAAGGTGAAGAAGCCAACTAGGAACAATCCTTGGGT 1619
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1643 CAGTGTGGTGTGGAAGGCAATGAGGAAGGTGAAGAAGCCAACCAGGAACAATCCTTGGGT 1702
Query 1620 GGATTGTATCAACCGTTACCCTGTGCCTCTCTAA 1653
|||||| |||||||||||||||||||||||||||
Sbjct 1703 GGATTGCATCAACCGTTACCCTGTGCCTCTCTAA 1736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5