BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900573
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27680.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1580 0.0
> AT2G27680.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr2:11803811-11806013 REVERSE LENGTH=1373
Length=1373
Score = 1580 bits (855), Expect = 0.0
Identities = 1064/1165 (91%), Gaps = 14/1165 (1%)
Strand=Plus/Plus
Query 1 ATGCC-GATGTCCGTACATTCCGTCATCGCCACGAACCTAGCGACTACAGTATCATCCAA 59
||||| | |||||||||||||||| ||||||||||||||||| |||||| ||||||| ||
Sbjct 49 ATGCCTG-TGTCCGTACATTCCGTTATCGCCACGAACCTAGCCACTACACTATCATCGAA 107
Query 60 TTGGTTAAACCGGCGTGTTTCTCGCCGTCGAATC-GGCTCCAGCTCCGTGAAATGCTCGA 118
|| ||||| ||||||||||||| ||| | ||||| ||| ||||| || |||
Sbjct 108 ----TT--ACCGGAATGTTTCTCGCCGTAGAA-CTATCTCCACCTCTGTGAATTGTTCGG 160
Query 119 CGGAGACGACGGAAGCTGACCGGTGGGTGAAGCTGAAGAACGGGAACGATTCACTGGAGA 178
||||| ||||| ||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 161 TGGAGATTACGGAGGCTGATCGGTCGGTGAAACTGAAGAACGGGAACGATTCACTGGAGA 220
Query 179 TATGCAGAGTTCTTAACGGAATGTGGCAAACGAGTGGAGGATGGGGGAAGATTGACCGAA 238
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 221 TATGCAGAGTTCTCAACGGGATGTGGCAAACGAGCGGAGGATGGGGGAAGATTGATCGAA 280
Query 239 ACGACGCCGTAGATGCTATGCTCCGATACGCCGATGCTGGTCTCTCTACCTTCGATATGG 298
|||||||||| ||| | ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 281 ACGACGCCGTTGATTCAATGCTTCGTTACGCCGATGCTGGTCTCTCTACTTTCGATATGG 340
Query 299 CTGA-CATTTATGGTCCTTCTGAAGATCTTTACGGCATTTTTGTCAATAGAGTTCGTCGA 357
|||| || ||||||||| |||||||||||||||| |||||| |||||||||||||||||
Sbjct 341 CTGATCA-CTATGGTCCTGCTGAAGATCTTTACGGTATTTTTATCAATAGAGTTCGTCGA 399
Query 358 GAGCGTCCACCGGAGTACTTGGAGAAGATTAAAGGTTTGACAAAATGGGTTCCTCCTCCA 417
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 400 GAGCGTCCACCGGAGTACTTGGAGAAGATTAAAGGTTTGACAAAATGGGTGCCTCCTCCA 459
Query 418 GTGAAA-ATGACTCGTAGCTATGTTCGTGAAAACATCGAAAAATCGCGGAAGAGAATGGA 476
| ||| ||||| |||||||||||||| | |||||||| | |||| |||||||||||||
Sbjct 460 AT-AAAGATGACAAGTAGCTATGTTCGTCAGAACATCGATATATCGAGGAAGAGAATGGA 518
Query 477 TGTGGCTTCTCTTGATATGCTTCAGTTTCATTGGTGGGATTATGCAAATGACGGTTATCT 536
||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 519 TGTGGCTGCTCTTGATATGCTTCAGTTTCACTGGTGGGATTATGCGAATGACGGCTATCT 578
Query 537 TGATGCACTGAAACATCTCACTGACCTAAAAGAAGAAGGTAAAATCAAGACCGTTGCATT 596
||||||||||||||||||||| ||| | || |||||||| ||||||||||| ||||| ||
Sbjct 579 TGATGCACTGAAACATCTCACAGACTTGAAGGAAGAAGGGAAAATCAAGACTGTTGCTTT 638
Query 597 GACAAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAG 656
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GACTAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAG 698
Query 657 CAATCAGGTGCAACACTCTATTGTAGACATGCGTCCTCAACAAAGAATGGCTCAGCTTTG 716
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 699 CAATCAGGTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTTTG 758
Query 717 TGAGCTTTCAGGCGTTAAACTTATAACATATGGGACTGTAATGGGTGGTCTCCTGTCAGA 776
|||||| |||| || |||||||||||||||||||| || |||||||||||| |||||||
Sbjct 759 CGAGCTTACAGGGGTCAAACTTATAACATATGGGACAGTTATGGGTGGTCTCTTGTCAGA 818
Query 777 GAAGTTTCTTGATGCTAATCTAACAATCCCTTTTGCTGGCCCTCGCTTGAATACTCCTTC 836
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 819 GAAGTTTCTTGATACCAATCTAACAATCCCTTTTGCTGGCCCTCGCTTGAATACTCCATC 878
Query 837 TCTCCAAAAGTACAAAAGGATGGTTGATGCATGGGGAGGGTGGAATCTATTCCAAGGTTT 896
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 879 TCTCCAAAAATACAAAAGGATGGTTGATGCATGGGGAGGGTGGAATCTATTTCAAGGTTT 938
Query 897 ACTTCGAACGATGAAGAGTATAGCCACAAAACATGGAGTCTCGATTCCAACAGTGGCTGT 956
||||||||| ||||||| ||| ||||||||||||||||||| || ||||||||||||||
Sbjct 939 ACTTCGAACAATGAAGACCATATCCACAAAACATGGAGTCTCTATACCAACAGTGGCTGT 998
Query 957 GAGATATGTACTAGATCAGCCTGGGGTTGCTGGATCAATGATTGGGGTGAGACTCGGGTT 1016
|||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||
Sbjct 999 GAGATATGTACTAGATCAGCAAGGAGTTGGTGGATCAATGATTGGAGTGAGACTCGGGTT 1058
Query 1017 AGCGGAACACATACAAGACGCAAACGCTATATTCTCATTGGTATTGGATGAAGAAGATGT 1076
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1059 AGCGGAACACATACAAGACGCAAATGCTATATTCTCATTGGTATTGGATGAAGAAGATGT 1118
Query 1077 TAATAGCATACAAGAGGTTACCAAGAAAGGAAAAGATCTTCTCCAAGTGATTGGTGATTG 1136
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1119 TAATAGCATACAAGAGGTTACCAAGAAAGGTAAAGATCTTCTCCAAGTGATTGGTGACTG 1178
Query 1137 TGGAGACGAATACCGAAGTATATGA 1161
||||||||||||||| ||||||||
Sbjct 1179 CGGAGACGAATACCGACGTATATGA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5