BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900606

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52640.1 | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90...   551    2e-156


> AT5G52640.1 | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, 
AtHsp90-1, HSP90.1 | heat shock protein 90.1 | chr5:21352399-21355361 
FORWARD LENGTH=2475
Length=2475

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 378/416 (91%), Gaps = 7/416 (2%)
 Strand=Plus/Plus

Query  28    aaagaaggactgaagcttgaagatgagactgaag-a-agaa-aaaaagagggaagagaag  84
             |||||||| || || |||||||||||||| |||| | |||| ||||||||||||||||| 
Sbjct  1710  AAAGAAGGCCTCAAACTTGAAGATGAGACCGAAGAAGAGAAGAAAAAGAGGGAAGAGAA-  1768

Query  85    gaagaa-TCTTTCGAGAATCTCTGCAAGACGATTAAGGAAATTCTTGGAGATAAAGTTGA  143
             |||||| || ||||||||||| ||||||||||||||||||||||| || || || |||||
Sbjct  1769  GAAGAAGTCCTTCGAGAATCTGTGCAAGACGATTAAGGAAATTCTCGGGGACAAGGTTGA  1828

Query  144   GAAGGTTGTGGTCTTAGACAGGATTGTGGACTCTCCTTTCTGTCTAGTAACTGGTGAATG  203
             |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| 
Sbjct  1829  GAAGGTTGTGGTCTCAGACAGGATTGTGGACTCTCCCTGCTGTCTAGTAACTGGTGAATA  1888

Query  204   CGGATGGACTGCGAACATGGAGAGGATTATGAAGACAGAGGCGTTGAGAGATAGC-GTCA  262
              ||||||||||| || |||||||||||||||||| || ||||||||||||||||| | ||
Sbjct  1889  TGGATGGACTGCAAATATGGAGAGGATTATGAAGGCACAGGCGTTGAGAGATAGCAG-CA  1947

Query  263   TGAGTGGTTACATGTCGAGCAAGAAAACAATGGAGATCAACCCCGACAATGGTATCATGG  322
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct  1948  TGAGTGGTTACATGTCGAGCAAGAAAACAATGGAGATCAACCCCGACAACGGTATAATGG  2007

Query  323   AGGAGCTGAGGAAAAGAGCTGAAGCAGACAAGAATGACAAGTCTGTTAAAGATCTTGTCA  382
             ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2008  AGGAGCTCAGGAAGAGAGCTGAAGCAGACAAGAATGACAAGTCTGTTAAAGATCTTGTCA  2067

Query  383   TGTTGTTGTTTGTGACAACTTTGTTGACTTCTGGATTCAATCTTGATCAACCAAAC  438
             ||||| ||| || |||| |||||||||| |||||||||| ||||||| |||| |||
Sbjct  2068  TGTTGCTGTATGAGACAGCTTTGTTGACGTCTGGATTCAGTCTTGATGAACCGAAC  2123



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5