BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901023
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32150.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1227 0.0
> AT2G32150.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr2:13659006-13660764 FORWARD
LENGTH=1114
Length=1114
Score = 1227 bits (664), Expect = 0.0
Identities = 754/797 (95%), Gaps = 7/797 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTCTCCTCTCCGATCAACTGCCTCATTTTCGATTTGGATGACACATTATACCCT 60
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 ATGGA-TT-T-CTCTCCGATCAACTGCCTCATTTTCGATTTGGATGACACATTATACCCT 146
Query 61 CTGAAAACCGGAATAGCGCCAGCTGTCAAGAAGAATATCGACGATTTTCTGGTGGAGAAA 120
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 147 CTAAAAACTGGAATAGCGCCAGCTGTCAAGAAGAATATTGACGATTTTCTAGTGGAGAAA 206
Query 121 TTTGGATTCTCAGAAAGTAAAGCTTCAAGTTTAAGAGTTGAACTCTTCAAGACTTATGGA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 207 TTTGGATTCTCAGAAAGTAAAGCTTCAAGCTTAAGAGTTGAACTCTTCAAGACTTATGGA 266
Query 181 AGTACTCTTGTTGGTCTCAGGGCGTTAGGTCATGATGTTCATCCTGATGAATATCACAGT 240
|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AGTACTCTCGCTGGTCTTAGGGCGTTAGGTCATGATGTTCATCCTGATGAATATCACAGT 326
Query 241 TTCGTGCACGGAAGATTACCGTATGGCTCGATCGAACCAAACAACAAGCTACGTAACCTT 300
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 327 TTCGTGCACGGAAGGTTACCGTATGGGTCGATCGAACCAAACAACAAGCTACGTAACCTT 386
Query 301 CTCAACAATATCAAACAGAGAAAAATTATATTTACGAATTCGGACAGGAATCATGCGGTG 360
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 387 CTCAACAAAATCAAACAGAGAAAAATTATATTTACGAATTCGGACAAGAATCATGCGGTG 446
Query 361 AAAGTTCTTGAGAAA-TTGGGTTTACAAGATTGTTTCGAAGAGATGATTTGTTTTGAGAC 419
|| || || ||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 447 AAGGTCCTCAAGAAACTT-GGTTTAGAAGATTGTTTCGAAGAGATGATTTGTTTTGAGAC 505
Query 420 AATGAACCCGAATTTATTCGAGTCAACAACCCGACCCGATGAACACCCGGTTGTTCTCAA 479
||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 506 AATGAACCCAAATTTATTCGGGTCAACAACCCGACCCGATGAATACCCGGTTGTTCTCAA 565
Query 480 GCCGTCGTTGACTGCAATGGATATTTGCATTCGTGTAGCCAACGTTGATCCTCGCCGAAC 539
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GCCTTCGTTGACCGCAATGGATATTTGCATTCGTGTAGCCAACGTTGATCCTCGCCGAAC 625
Query 540 AGTATTTTTGGATGATAATATCCACAATATTACCGCGGGTAAGTCTGTCGGGCTTCGCAC 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 626 AGTATTTTTGGATGATAATATCCACAATATTACCGCGGGTAAATCTGTCGGGCTTCGCAC 685
Query 600 AATACTGGTGGGAAGAGCAGAAAAGACGAAAGATGCGGATTATGCGGTGGAGACGGTGAC 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 686 AATCCTGGTGGGAAGAGCAGAAAAGACGAAAGATGCGGATTATGCGGTGGAGACGGTTAC 745
Query 660 TGAGATAGCTACGGCGGTACCGGAGATTTGGAAGACGGCAACGGCTACGGGCGGGTTTGA 719
|||||||||||||||||| || ||||||||| ||||| ||||| || ||||| |||||
Sbjct 746 TGAGATAGCTACGGCGGTGCCAGAGATTTGGGCTACGGCGACGGCGACAGGCGGATTTGA 805
Query 720 CGTCGGCGGTGAGAGGATCAGACGGAGCAAGAGTGAGCTGGAGGGTATGGCTTCAATCA- 778
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 806 CGTTGGTGGTGAGAGGATCAGACGGAGCAAGAGTGAGCTGGAGGGTATGGCTTCAAT-AG 864
Query 779 CAGCCGTCGGTGCGTGA 795
|||||||||||||||||
Sbjct 865 CAGCCGTCGGTGCGTGA 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5