BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901082
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32710.1 | Symbols: KRP4, ACK2, ICK7 | Cyclin-dependent kina... 1000 0.0
> AT2G32710.1 | Symbols: KRP4, ACK2, ICK7 | Cyclin-dependent kinase
inhibitor family protein | chr2:13873436-13875831 FORWARD
LENGTH=1411
Length=1411
Score = 1000 bits (541), Expect = 0.0
Identities = 739/826 (89%), Gaps = 47/826 (6%)
Strand=Plus/Plus
Query 34 GGAGGTGGAGGTGAATCCTCTATAGCTTTAATGGATGTTGTTTCACcttcttcttcttct 93
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||
Sbjct 130 GGAGGTGGAGGTGAATCCTCTATTGCTTTAATGGATGTTGTTTCACCTTCTTC--C-TCT 186
Query 94 tcttcACTTGGTGTTTTAACTCGAGCTAAATCTCTAGCTCTCcaacaacaacaacaacaa 153
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 187 TCTTCACTTGGTGTTTTAACTCGAGCTAAATCTCTAGCTCT------TCAACAACAACAA 240
Query 154 caacGCCGTCTTCTTCCAAAGCCCTC-T-T-CTTCGTCGTTACCACCGACTTCTCCTTCT 210
|||||| ||||||||| ||| ||||| | | |||| |||||||||||||||||| |||||
Sbjct 241 CAACGCTGTCTTCTTCAAAAACCCTCTTCTCCTTCTTCGTTACCACCGACTTCTGCTTCT 300
Query 211 CCTAATCCACCGTCGAAA-CAG-A-A-GAATAAGAAGAAGCAGCAGATTAACGATTGTGG 266
|||||||||||||| ||| ||| | | ||| |||||| |||||||||| |||||||||||
Sbjct 301 CCTAATCCACCGTC-AAAGCAGAAGATGAAGAAGAAGCAGCAGCAGATGAACGATTGTGG 359
Query 267 TTCGTATCTTCAGCTACGGAGTCGTCGTCTTCAGAAGAAACCTCCAATTGTTGTGATTCG 326
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 360 TTCGTATCTTCAGCTACGGAGTCGTCGGCTTCAGAAGAAACCACCAATTGTTGTGATTCG 419
Query 327 TTCTACTAAAC----G-----G--A-GGA--AA-GAGACATGCGGAACAAACCCTAACCC 371
||||||||||| | | | ||| || ||||||||||||| ||||||||||||
Sbjct 420 TTCTACTAAACGGAGGAAACAGCAACGGAGGAATGAGACATGCGGAAGAAACCCTAACCC 479
Query 372 TAGTTCTAATTTGGATTCGATTCGTGGCTCGATTTGTGCTGATGGGTCTAGGTCTGATTC 431
||| |||||||||||||| | ||| || | |||||||||||||||||||||
Sbjct 480 TAGGAGTAATTTGGATTCGA----T---TCG---TG-G-TGATGGGTCTAGGTCTGATTC 527
Query 432 GGTTTCTGAGAGTGTTGTCTTTGGTAAAGATAAGGAATTGGTTTGTGAAATCAGCAAAGA 491
|||||||| |||||||||||||||||||| ||||| ||| ||| |||||||| |||||
Sbjct 528 TGTTTCTGAAAGTGTTGTCTTTGGTAAAGACAAGGATTTGATTTCTGAAATCAATAAAGA 587
Query 492 TCCTTCCTTTGGGCAAAATTTCTTCGAGCTTGAAGAAGAAGAACCCACTCAAAGCTTCAA 551
||| ||||||| |||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 588 TCCAACCTTTGGCCAAAATTTCTTCGACCTT---GAAGAAGAACACACTCAAAGCTTCAA 644
Query 552 TAGGACCACAAGGGAATCCACACCATGCAGTTTGATAAGAAGGCCTGAAATCATCACAAC 611
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 645 CAGGACCACAAGGGAATCCACACCATGCAGTTTGATAAGAAGGCCTGAAATCATGACAAC 704
Query 612 CCCGGGATCGTCTACAAAGCTTAACATCTGTGTAAGTGACAGCACCCAGAGAGAAGAGAG 671
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||
Sbjct 705 CCCGGGATCGTCTACAAAGCTTAACATTTGTGTAAGTGAAAGCAACCAGAGAGAAGACAG 764
Query 672 TTTGTCTCGCAGCCATCGTCGCCTACCAACCACACCTGAAATGGACGAGTTTTTCTCGGG 731
|||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 765 TTTGTCACGCAGCCATCGTCGCCGACCAACTACACCTGAAATGGACGAGTTTTTCTCGGG 824
Query 732 GGCTGAAGAAGAACAACAGAAACAATTCATTGAGAAGTACAACTTTGATCCTGTGAACGA 791
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 825 TGCTGAAGAAGAACAACAGAAGCAATTCATTGAGAAGTACAACTTTGATCCTGTGAACGA 884
Query 792 ACAACCACTACCAGGACGGTTTGAATGGACGAAGGTAGATGATTAG 837
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ACAACCACTACCAGGACGGTTTGAATGGACGAAGGTAGATGATTAG 930
Score = 69.4 bits (37), Expect = 5e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAATACATAAGAAAGAGCAAAATCGATGGAGGTGGAG 43
|||||||||||||||||||||||||||||||| |||| |||||
Sbjct 61 ATGGGGAAATACATAAGAAAGAGCAAAATCGACGGAGCTGGAG 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5