BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901370
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1626 0.0
> AT2G35260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G17840.1);
Has 42 Blast hits to 42 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14849536-14851969
FORWARD LENGTH=1623
Length=1623
Score = 1626 bits (880), Expect = 0.0
Identities = 1067/1151 (93%), Gaps = 37/1151 (3%)
Strand=Plus/Plus
Query 1 ATGGAGCTTCCGCTACTCTCGTATGCTAGCTCCGCGTCGTTTTCGCGGACAGGC-T-T-- 56
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 107 ATGGAGCTTCCGTTACTCTCGTATGCTAGCTCCGCGTCGTTTTCACGGACAGGCTTATGC 166
Query 57 T-TAC-TCTTCTTCTTCCTCAACTAGTATCTGTGAGTTCCCGGAGAGAAGACGGAGCTTC 114
| | | |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 167 TCTTCTTCTTCTTCCTCCTCAACTAGTATCTATGAGTTTCCGGAGAGAAGACGGAG-TTT 225
Query 115 AGAA-TGAGATTCAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAG 173
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 AAAATTGAGATTCAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAG 285
Query 174 CAGCGAAGGGATCGAGAAG---ACAG--A----C---GGC---------GGA-G-G-A-G 208
||| |||||||| |||||| |||| | | ||| ||| | | | |
Sbjct 286 CAGTGAAGGGATTGAGAAGACAACAGACACCGTCGGTGGCGGAGGAGGAGGAGGAGCAGG 345
Query 209 --GATTTGCTGGTACTGCCATGGAGGTGACAACACTTGATCGTGGATTCGCTAACTCCAC 266
||||||||||||||||||||||||| || |||||||||||||| || |||||||||||
Sbjct 346 CAGATTTGCTGGTACTGCCATGGAGGTTACTACACTTGATCGTGGTTTTGCTAACTCCAC 405
Query 267 CACCGTTGATTTTCCGATCTGGGACAAAATTGGCGCCGTCGTTAGACTTACTTACGGAAT 326
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 406 CACCGTTGATTTTCCGATCTGGGACAAAATCGGCGCCGTCGTTAGACTTACTTATGGAAT 465
Query 327 CGGAATATATGGAGCAATGGCTGTAGCAGGAAGATTCATATGTTCAGTGACTGGAATTGA 386
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 466 CGGAATATATGGAGCAATGGCTGTAGCAGGAAGATTTATATGTTCAGTGACTGGAATTGA 525
Query 387 TTCATCTGGTGGATTTGATCCTTCTCTTGACGCACTTCTCGCCGGACTTGGCTATGCAAC 446
|||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 526 TTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAAC 585
Query 447 ACCACCAATCATGGCTCTTCTCTTCATACTCGATGATGAAGTTGTGAAGCTATCACCGCA 506
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 586 ACCACCAATCATGGCTCTTCTCTTCATACTCGACGATGAAGTTGTGAAGCTATCACCGCA 645
Query 507 CGCTCGGGCCATTAGAGATGTGGAAGATGAGGAGCTCAGAAGCTTTTTCTTCGGAATGTC 566
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 646 TGCTCGGGCCATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTC 705
Query 567 CCCATGGCAGTTTATACTCATTGTCGCGGCTAGTTCAATAGGAGAAGAGCTCTTTTACCG 626
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 706 CCCATGGCAGTTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCG 765
Query 627 TGTTGCTGTACAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TGTTGCTGTACAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGA 825
Query 687 TTCTAGAGGCATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTCAAGC 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 826 TTCTAGAGGCATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGT 885
Query 747 CTTTGCAGCTGTAATCACTGCCACTCTCACAGGCTCTCTCTACTTTCTTGCTGCTTCTCC 806
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 886 CTTTGCAGCTGTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCC 945
Query 807 AAAGGACCCGACATACATTGTTGCCCCGGTTTTAAGGTCACG-CAGAGATGATTTTAAGA 865
||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 946 AAAAGACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGC-GAGATGATTTTAAGA 1004
Query 866 AGCTTTTGTCAGCTTGGTACGAGAAGAGACAGATGAAGAAGATTTACTCTCCTCTACTCG 925
||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
Sbjct 1005 AGCTTTTGTCAGCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTG 1064
Query 926 AAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGACCGATAATATTTTAGCAC 985
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1065 AAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGACGGATAATATATTAGCAC 1124
Query 986 CGATGATGACGCATGGTATATACTCGGCAGTCATATTAGGACATGGGCTGTGGAAAATTC 1045
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1125 CGATGATGACGCATGGTATATACTCGGCGGTCATATTAGGGCATGGGCTGTGGAAAATTC 1184
Query 1046 ATGATCACCGGAGAAGATTACGCCGGAGAATCGAACGCATTAGATCGGAGGCTACCGATA 1105
| |||||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 1185 ACGATCACCGGAGAAGGTTACGCCGGAGAATCGAACACATTAGATCGGAGGCCACGGATA 1244
Query 1106 AGTTGATTTAA 1116
|||||||||||
Sbjct 1245 AGTTGATTTAA 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5