BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901619
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37460.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1186 0.0
AT2G37450.2 | Symbols: | nodulin MtN21 /EamA-like transporter ... 684 0.0
> AT2G37460.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr2:15726448-15729098 REVERSE LENGTH=1450
Length=1450
Score = 1186 bits (642), Expect = 0.0
Identities = 718/754 (95%), Gaps = 7/754 (1%)
Strand=Plus/Plus
Query 274 AGT-AAGCTACGGTGCATTAGGAGCGCGGGTAAGGTGGTTGGGACATTGGCTACTGTTGG 332
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 478 AGTAAAGCTACGGTGCATTAGGAGCACGGGTAAGGTGGTTGGAACATTGGCTACTGTTGG 537
Query 333 AGGAGCCATGATCATGACACTTGTCAAAGGCCCAGTTGTTGACCTCTTTTGGACCAAAGG 392
||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||
Sbjct 538 AGGAGCCATGATCATGACACTTGTCAAAGGCCCAGTTCTCGATCTGTTTTGGACCAAAGG 597
Query 393 AGTCTCTGCACATAACACAGCTGGGACCGACATTCATAGCGCCATCAAAGGCGCAGTATT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGTCTCTGCACATAACACAGCTGGGACCGACATTCATAGCGCCATCAAAGGCGCAGTATT 657
Query 453 GGTCACCATTGGTTGTTTCAGCTATGCATGTTTCATGATTCTACAAGCGATAACATTAAG 512
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 658 GGTCACGATTGGTTGTTTTAGCTATGCATGTTTCATGATTCTCCAAGCGATAACATTAAG 717
Query 513 AACTTACCCCGCTGAGCTCTCTCTCACAGCATGGATATGCCTAATGGGGACAATAGAAGG 572
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 718 GACTTACCCTGCTGAGCTCTCTCTCACAGCATGGATATGTCTTATGGGGACAATAGAAGG 777
Query 573 AACCGCCGTGGCATTAGTGATGGAGAAAGGAAATCCCGGTGCTTGGGCCATTGGTTGGGA 632
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 778 AACCGCCGTGGCATTAGTGATGGAGAAAGGAAATCCCAGCGCATGGGCCATTGGTTGGGA 837
Query 633 CACTAAACTTCTTACAGCCACCTATAGCGGGATAGTGTGCTCAGCATTGGCTTACTACGT 692
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 838 CACTAAACTTCTTACAGCCACCTATAGTGGGATAGTGTGCTCAGCATTGGCTTACTACGT 897
Query 693 TGGAGGAGTGGTGATGAAAACCAGAGGTCCTGTGTTTGTGACAGCTTTCAGTCCTCTTTG 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGGAGGAGTGGTGATGAAAACCAGAGGTCCTGTGTTTGTGACAGCTTTCAGTCCTCTTTG 957
Query 753 TATGATCATAGTAGCGATTATGTCGACCATCATCTTTGCTGAGCAGATGTACCTTGGAAG 812
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 958 TATGATCATAGTAGCGATTATGTCGACCATCATCTTTGCTGAGCAAATGTACCTTGGAAG 1017
Query 813 GGTCCTTGGTGCGGTAGTTATATGTGCAGGATTATACCTTGTGATATGGGGCAAAGGCAA 872
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1018 GGTTCTTGGTGCTGTAGTTATATGTGCAGGATTATACCTTGTGATATGGGGCAAAGGAAA 1077
Query 873 AGATTACAAACATCATTCCACGCTGCAAATAGATGATGAATCAGCACAACCAAAGCTAGA 932
|||||||||| || |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1078 AGATTACAAATATAATTCCACGCTGCAATTAGATGACGAATCAGCACAACCAAAGCTAGA 1137
Query 933 ACTAAGCGG----G--AAGGATAATGTTGATCATGAAGTCATTACTATTAGCAAGCAAGG 986
||||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1138 ACTAAGCGGAAACGGGAAGGATAATGTTGATCATGAAGTCATTACTATAAGCAAGCAAGG 1197
Query 987 AGAACAAAGAAGAACAGTTATAGAGACAGTCTAA 1020
||||||||||||||||| | |||| |||||||||
Sbjct 1198 AGAACAAAGAAGAACAGCTGTAGAAACAGTCTAA 1231
Score = 357 bits (193), Expect = 1e-97
Identities = 201/205 (98%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGTAAAGAAGAGGGATTGTATGGAGAAGGCAAGGCCATTCATTTCTATGGTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 89 ATGGAGGAAGTAAAGAAGAGGGATTGTATGGAGAAGGCAAGGCCATTCATTTCAATGGTA 148
Query 61 GTGTTGCAAGTAGGGCTAGCAGGAATGGATATTCTCTCAAAGGCTGTTCTAAACAAAGGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTGTTGCAAGTAGGGCTAGCAGGAATGGATATTCTCTCAAAGGCTGTTCTAAACAAAGGC 208
Query 121 ATGAGCAATTACGTTCTTGTTGTTTACCGTCACGCCGTTGCAACTGTCGTTATGGCCCCG 180
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 209 ATGAGCAATTACGTCCTTGTTGTTTACCGTCACGCCGTTGCAACCATCGTTATGGCCCCG 268
Query 181 TTCGCCTTCTATTTCGACAAGAAGG 205
|||||||||||||||||||||||||
Sbjct 269 TTCGCCTTCTATTTCGACAAGAAGG 293
Score = 115 bits (62), Expect = 8e-25
Identities = 62/62 (100%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 205 GCCAGTGATCGACCAGAACTTATACTATCTCGGGATGAAATATACGACAGCTACATTTGC 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GCCAGTGATCGACCAGAACTTATACTATCTCGGGATGAAATATACGACAGCTACATTTGC 411
Query 265 AA 266
||
Sbjct 412 AA 413
> AT2G37450.2 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr2:15722568-15724937 REVERSE LENGTH=1357
Length=1357
Score = 684 bits (370), Expect = 0.0
Identities = 554/642 (86%), Gaps = 16/642 (2%)
Strand=Plus/Plus
Query 292 AGGAGCGCGGGTAAGGTGGTTGGGACATTGGCTACTGTTGGAGGAGCCATGATCATGACA 351
||||| || | |||||||||||| ||| | |||| ||||||||| |||| ||||||||
Sbjct 414 AGGAGTGCCGCTAAGGTGGTTGGAACAGTAACTACAGTTGGAGGAATCATGGTCATGACA 473
Query 352 CTTGTCAAAGGCCCAGTTGTTGACCTCTTTTGGACCAAAGGAGTCTCTGCACATAACACA 411
||||| ||||| |||| | |||||||||| ||||| |||||| ||||||||| ||||||
Sbjct 474 CTTGTAAAAGGTCCAGCTCTTGACCTCTTCTGGACTAAAGGACCCTCTGCACAGAACACA 533
Query 412 GCTGGGACCGACATTCATAGCGCCATCAAAGGCGCAGTATTGGTCACCATTGGTTGTTTC 471
| ||||||||| ||||||||| |||||||||| ||||| || ||||| |||||||| |||
Sbjct 534 GTTGGGACCGATATTCATAGCTCCATCAAAGGTGCAGTTTTAGTCACAATTGGTTGCTTC 593
Query 472 AGCTATGCATGTTTCATGATTCTACAAGCGATAACATT-AAGAACTTACCCCGCTGAGCT 530
|||||||||||||||||||| |||||||| || ||||| ||| |||||||| || |||||
Sbjct 594 AGCTATGCATGTTTCATGATACTACAAGCAATCACATTGAAG-ACTTACCCTGCAGAGCT 652
Query 531 CTCTCTCACAGCATGGATATGCCTAATGGGGACAATAGAAGGAACCGCCGTGGCATTAGT 590
||||||| || |||||||||||||||| || |||||||| ||| | || ||||||||
Sbjct 653 CTCTCTCGCAACATGGATATGCCTAATAGGTACAATAGAGGGAGTAGTTGTAGCATTAGT 712
Query 591 GATGGAGAAAGGAAATCC-CG-GTGCTTGGGCCATTGGTTGGGACACTAAACTTCTTACA 648
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 713 GATGGAGAAAGGAAATCCTAGCGTG--TGGGCCATTGGTTGGGACACTAAACTTCTTACA 770
Query 649 GCCACCTATAGCGGGATAGTGTGCTCAGC-ATTGGCTTACTACGTTGGAGGAGTGGTGAT 707
||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 771 ATCACCTATAGTGGGATAGTGTGCTCAGCGCTTGG-TTACTACATTGGAGGAGTGGTGAT 829
Query 708 GAAAACCAGAGGTCCTGTGTTTGTGACAGCTTTCAGTCCTCTTTGTATGATCATAGTAGC 767
|||||||||||||||||||||||| |||||||||| ||||||||||||||| | || ||
Sbjct 830 GAAAACCAGAGGTCCTGTGTTTGTAACAGCTTTCAAACCTCTTTGTATGATCGTTGTGGC 889
Query 768 GATTATGTCGACCATCATCTTTGCTGAGCAGATGTACCTTGGAAGGG-TCCTTGGTGCGG 826
||||||||||| ||||||||||| ||||||||||||||| ||||||| || |||||||
Sbjct 890 GATTATGTCGAGCATCATCTTTGATGAGCAGATGTACCTCGGAAGGGCTC-TTGGTGC-- 946
Query 827 TA-GTT-ATATGTGCAGGAT-TATACCTTGTGATATGGGGCAAAGGCAAAGATTACAAAC 883
|| | | ||||||| ||| | |||||||||||||||||||||||| ||||||||| ||
Sbjct 947 TACGGTCATATGTGTAGG-TCTATACCTTGTGATATGGGGCAAAGCCAAAGATTATGAAT 1005
Query 884 ATCATTCCACGCTGCAAATAGATGATGAATCAGCACAACCAA 925
||| | ||||| ||||||||||||||| | ||||||| |||
Sbjct 1006 ATCCTAGCACGCCGCAAATAGATGATGACTTAGCACAAGCAA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5