BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg901662 Length=1170 Score E Sequences producing significant alignments: (Bits) Value AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast auto... 1219 0.0 AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast auto... 665 0.0 > AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast autophagy 18C | chr2:17032464-17034600 FORWARD LENGTH=1576 Length=1576 Score = 1219 bits (660), Expect = 0.0 Identities = 735/772 (95%), Gaps = 2/772 (0%) Strand=Plus/Plus Query 400 ATTTATGTTTACAATTTTATGGACCTTAGACTTCTTCATCAGATTGAAACCCAAGCTAAT 459 ||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 547 ATTTATGTTTATAACTTTATGGATCTTAGACTTCTTCATCAGATTGAAACTCAAGCTAAT 606 Query 460 CCTAGAGGATTATGTTGCCTTTCTCATCATTCTAATACGTCTGTGCTCGCTTGCCCCGGT 519 ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||| Sbjct 607 CCTAGAGGATTGTGTTGCCTTTCTCATCATTCTAATACGTCTGTGTTGGCTTGCCCTGGT 666 Query 520 CTTC-ATCGAGGAGAGATTCGAGTTGAACATTTCGGGCTTAACATGGTACAAATCATAAA 578 | || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 667 C-TCAATCGAGGAGAGATTCGTGTTGAACATTTCGGGCTTAACATGGTACAAATCATAAA 725 Query 579 TGCTCATGATTCTAGTATTGCGTGTATGACTTTGACATTGGATGGTTTGTTGCTCGCAAC 638 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 726 TGCTCATGATTCAAGTATTGCGTGTATGACCTTGACATTGGATGGTTTGTTGCTTGCAAC 785 Query 639 TGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACTATGGACGGAACTCGTTTGCA 698 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 786 TGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACAATGGATGGAACTCGTTTGCA 845 Query 699 AGAGGTACGAAGAGGAGTGGACAGAGCAGATATTTATAGCATTGCACTTTCACCAAACGT 758 |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || Sbjct 846 AGAGGTACGAAGAGGAGTCGACAGAGCAGATATATATAGCATTGCACTTTCACCAAATGT 905 Query 759 GCAGTGGCTGGCTGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTTAGAGTTAG 818 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 906 GCAGTGGCTGGCGGTATCAAGTGACAAGGGGACTGTTCACATTTTCTCTCTTAGAGTTAG 965 Query 819 GCTAGTTGGGGAGGATTCTTATTCCACTGAAAATGCAGCTCTCCTGACACAACAAACTTA 878 | | ||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| Sbjct 966 GGTTGTTGGGGAGGATTCTTATTCCACTGAAAATGGAGCTCTGTTGACACAACAAAATTA 1025 Query 879 TTCTACTTCTCTGCAAGGCATTGTTTCTCCAACCACTGGTACCAATCCCGGTTCGTCATT 938 ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 1026 TTCTAATTCTCTGCAAGGCCTTGTTTCTCCAACCATTGGTACCAATCCCGGTTCGTCATT 1085 Query 939 GTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCACAGTT 998 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 GTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCACAGTT 1145 Query 999 TCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTGCTAT 1058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1146 TCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTGCTAT 1205 Query 1059 TATCGGCATGGATGGAAGTTTTTACAGATGCAGCTTTGATCCCGTGAACGGAGGAGAGAT 1118 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1206 TATCGGCATGGATGGAAGTTTCTACCGATGCAGCTTTGATCCCGTGAACGGAGGAGAGAT 1265 Query 1119 GGGGCAACTGGAATATTTCCACTTTCTGAAGACGGACAACCGCCGGAGATAA 1170 |||||||||||||||| |||||||| |||||| ||||||||||| | ||||| Sbjct 1266 GGGGCAACTGGAATATATCCACTTTATGAAGATGGACAACCGCCCGTGATAA 1317 Score = 407 bits (220), Expect = 1e-112 Identities = 281/311 (90%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 89 CAGAATCAGAATCTATTAACAACGACGAAGCAGAGTTGGTCACTGTGTGTAGGAATCAAG 148 |||||||||||||||| || || || ||||||||||| || |||||||| ||||||| | Sbjct 191 CAGAATCAGAATCTATGAAAAAAGAGGAAGCAGAGTTAGTTTCTGTGTGTTGGAATCAGG 250 Query 149 ATTCCAGTTGCTTCGCAGCTGGAACGAGTCATGGCTATCGTATATATAACTGTCAACCTT 208 |||| ||||| || |||||||||||||||||||| | |||||||||||||||| |||||| Sbjct 251 ATTCAAGTTGTTTTGCAGCTGGAACGAGTCATGGTTTTCGTATATATAACTGTGAACCTT 310 Query 209 TCAAGGAAACTTTCAGGCGTGAGCTAAAGAACGGTGGTTTCAAAATTGTAGAGATGCTTT 268 |||| |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| Sbjct 311 TCAAAGAAACTTTCAGGCGTGAGCTAAAGGACGGTGGTTTTAAAATCGTAGAGATGCTTT 370 Query 269 GCCGAATCAATATATTGGCACTTGTAGGTGGTGGACCTAACTCTCAGTACCCTTCAAACA 328 ||| | ||||||| |||||||||| ||||||||||||||||||||||| ||||||| || Sbjct 371 TCCGTAGCAATATACTGGCACTTGTTGGTGGTGGACCTAACTCTCAGTATCCTTCAAGCA 430 Query 329 AAGTACTAATTTGGGATGATCATCAGACCCGTTGCATTAGTGAATT-GCAATTAAGGTCT 387 ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||| Sbjct 431 AAGTACTAATTTGGGATGATCATCAGAGCCGTTGCATTAGTGAATTTGCATTTA-GGTCT 489 Query 388 GAGATTCGTGC 398 ||||||||||| Sbjct 490 GAGATTCGTGC 500 Score = 71.3 bits (38), Expect = 2e-11 Identities = 42/44 (95%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1 ATGAGCTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACAAGG 44 ||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 133 ATGAGTTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACCAGG 176 > AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast autophagy 18 (ATG18) D | chr3:20926001-20928988 FORWARD LENGTH=1656 Length=1656 Score = 665 bits (360), Expect = 0.0 Identities = 631/757 (83%), Gaps = 38/757 (5%) Strand=Plus/Plus Query 403 TATGTTTACAATTTTATGGACCTTAGACTTCTTCATCAGATTGAAACCCA-AGCTAATCC 461 ||||| |||||||||||||| || |||||||||||||||||||||| | || ||||| Sbjct 719 TATGTCTACAATTTTATGGATCTAAGACTTCTTCATCAGATTGAAA-ATATGGCAAATCC 777 Query 462 TAGAGGATTATGTTGCCTTTCTCATCATTC-T-AATACGTCTGTGC-TCGCTTGCCCCGG 518 || ||| |||||||||| |||||||| | | ||||| ||||| | | ||||| || || Sbjct 778 AAGGGGACTATGTTGCCTCTCTCATCA--CATGAATACATCTGT-CTTGGCTTGTCCAGG 834 Query 519 TCTTCATCGAGGAGAGATTCGAGTTGAACATTTCGGGCTTAACATGGTACAAATCATAAA 578 | ||| |||||||||| | |||||||||||||| |||||||||||||| |||||||| || Sbjct 835 TATTCGTCGAGGAGAGGTCCGAGTTGAACATTTTGGGCTTAACATGGTTCAAATCATTAA 894 Query 579 TGCTCATGATTCTAGTATTGCGTGTATGACTTTGACATTGGATGGTTTGTTGCTCGCAAC 638 |||||||||||||| ||| ||||| ||||| |||||||||||||| ||| | || ||||| Sbjct 895 TGCTCATGATTCTAATATCGCGTGCATGACCTTGACATTGGATGGCTTGCTCCTTGCAAC 954 Query 639 TGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACTATGGACGGAACTCGTTTGCA 698 ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| Sbjct 955 TGCCAGTACAAAGGGAACTCTGATTAGAATTTTCAACACGATGGACGGAACTCGTCTGCA 1014 Query 699 AGAGGTACGAAGAGGAGTGGACAGAGCAGATATTTATAGCATTGCACTTTCACCAAACGT 758 |||||| |||||||| ||||||||||||||||| ||||||||||| || ||||||||||| Sbjct 1015 AGAGGTCCGAAGAGGCGTGGACAGAGCAGATATCTATAGCATTGCTCTATCACCAAACGT 1074 Query 759 GCAGTGGCTGGCTGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTTAGAGTTAG 818 ||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1075 GCAGTGGCTTGCAGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTCAGAGTGAG 1134 Query 819 -GCTAGTTGGGGAGGATTCTTATTCCACTGAAAATGCAG-CTCTCCTGACACAACAAACT 876 | || | |||||||| | || ||||||||| ||| || || || | || || | Sbjct 1135 AGTTA-TAGGGGAGGACGCATACTCCACTGAACATG-AGACT-TCTT--CA-AA-----T 1183 Query 877 TATTCTACTTCTCTGCAAGGCA-TTGTTTCTCCAACCACTGGTACCAATCCC-GGTTCGT 934 | | | || ||| | | ||||||||||| ||| |||| |||| ||| ||||||| Sbjct 1184 T---C--C--CT--GCA-GCCTCTTGTTTCTCCAGCCAGTGGTGCCAA-CCCTGGTTCGT 1232 Query 935 CATTGTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCAC 994 ||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| | | | Sbjct 1233 CATTGTCTTTTCTGAGAGGTGTTCTACCAAAATATTTCAGCTCGGAATGGTCATTTTCTC 1292 Query 995 AGTTTCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAG-TAACAACACGGTT 1053 |||| |||||| | |||||||| |||| ||| ||||||||||| | | | ||||| || Sbjct 1293 AGTTCCATGTACCTGAAGTCACCCAATACTTTGCAGCATTTGGT-GCTCAGAACACAATT 1351 Query 1054 GCTATTATCGGCATGGATGGAAGTTTTTACAGATGCAGCTTT-GATCCCGTGAACGGAGG 1112 || ||||| ||| |||| |||||||| ||||| |||| ||| ||||| ||||||||||| Sbjct 1352 GCAATTATTGGCTTGGACGGAAGTTTCTACAGGTGCAA-TTTCGATCCAGTGAACGGAGG 1410 Query 1113 AGAGATGGGGCAACTGGAATATTTCCACTTTCTGAAG 1149 ||||||| || || ||| ||||||| ||||||||| Sbjct 1411 AGAGATGACTCAGCTTGAACATTTCCATTTTCTGAAG 1447 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57429423480 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5