BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901845
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39210.1 | Symbols: | Major facilitator superfamily protein... 1613 0.0
> AT2G39210.1 | Symbols: | Major facilitator superfamily protein
| chr2:16366157-16368275 REVERSE LENGTH=1980
Length=1980
Score = 1613 bits (873), Expect = 0.0
Identities = 939/971 (97%), Gaps = 3/971 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGCTGCAAGTCCCGGTGGCTCAATGAAGAGCTTAACCATCCAAATCCTAACCGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 45 ATGGTGGCTGCAAGTCCCGGTGGCTCAATGAAGAGCTTAACCATCCAAATCCTAACCGGA 104
Query 61 AGATGGTTCATGTTCTTTGGAAGTCTCTTAATCATGTCTACCGCTGGAGCCACTTACATG 120
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 105 AGATGGTTCATGTTCTTTGGAAGTCTCTTAATCATGTCGACAGCTGGAGCCACTTACATG 164
Query 121 TTCGGTATCTACTCAGGCGATATCAAGAAAACCTTAGGCTACGACCAAACCACTCTTAAT 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 165 TTCGGTATCTACTCAGGCGATATCAAGGAAACCTTAGGCTACGACCAAACCACTCTTAAT 224
Query 181 CTCCTCAGTTTCTTCAAAGATCTCGGAGCCAACGTTGGAGTTCTCGCGGGTCTACTCAAT 240
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 225 CTCCTAAGTTTCTTCAAAGATCTCGGAGCCAACGTTGGAGTCCTCGCGGGTCTACTCAAT 284
Query 241 GAGGTGACTCCACCTTGGTTCATCCTCTTGATCGGAGGCATCCTTAACTTCTTTGGATAC 300
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 285 GAGGTAACTCCTCCTTGGTTCATCCTCTTGATCGGAGCCATCCTTAACTTCTTTGGATAC 344
Query 301 TTCATGATTTGGCTCGCCGTCACGGAACGGATCTCGAAACCTCAAGTTTGGCACATGTGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TTCATGATTTGGCTCGCCGTCACGGAACGGATCTCGAAACCTCAAGTTTGGCACATGTGT 404
Query 361 CTCTATATCTGCGTTGGAGCCAACTCCCAGTCGTTCGCTAATACCGGATCTCTCGTCACG 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 405 CTCTATATCTGCGTTGGAGCCAACTCGCAGTCGTTCGCTAATACCGGATCTCTCGTCACG 464
Query 421 TGCGTTAAGAACTTCCCGGAGTCACGTGGGGTTGTCTTGGGGATTCTCAAGGGCTATGTT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 465 TGCGTTAAGAACTTCCCGGAGTCACGTGGGGTTGTCTTGGGGATTCTCAAAGGCTACGTT 524
Query 481 GGTCTTAGTGGCGCCATTATTACACAGCTCTACCGTGCCTTTTATGGTGAAGACACAAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GGTCTTAGTGGCGCCATTATTACACAGCTCTACCGTGCCTTTTATGGTGAAGACACAAAA 584
Query 541 GAGCTCATCTTGATGATTGGTTGGTTACCTGCAATAGTCTCGTTTGCGTTTTTGAGAACG 600
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 585 GAGCTCATCTTGATGATTGGTTGGTTGCCGGCTATAGTCTCGTTTGCGTTTTTGAGAACG 644
Query 601 ATAAGAATAATGAAAGTGAAGAGACAGACAAACGAACTAAAGGTGTTCTATAACTTCCTC 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 645 ATAAGAATAATGAAAGTGAAAAGACAGACAAACGAACTAAAGGTGTTCTATAACTTCCTC 704
Query 661 TACATATCTCTCGGGCTTGCGACGTTTCTCATGGTGGTCATCATCATCAACAAACTCTCG 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TACATATCGCTCGGGCTTGCGACGTTTCTCATGGTGGTCATCATCATCAACAAACTCTCG 764
Query 721 GGCTTTACACAAAGCGAGTTTGGAGGTAGCGCCGCAGTGGTGATCGTCTTGCTTCTTTTG 780
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 765 GGCTTTACACAAAGCGAGTTTGGAGGTAGCGCCGCGGTAGTGATCGTCTTACTTCTTTTG 824
Query 781 CCCATCATAGTCGTCATCTTGGAAGAGAAGAAGCTTTGGAGGGAGAAACAAGTCGCCTTA 840
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 825 CCCATTATAGTCGTCATCTTGGAAGAGAAGAAGCTTTGGAAGGAGAAACAAGTCGCCTTA 884
Query 841 AATGATCCAGCACCCATCAATGTCGTAACTGAGAAACCCAAGTTAGATTCATCAGAGTTC 900
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 AACGATCCAGCACCCATCAATGTCGTAACTGAGAAACCCAAGTTAGATTCATCAGAGTTC 944
Query 901 AAAGATGATGATG---AAGAGACAAAGGAGGAAGACGAGAAGGTTAAAACAGCGTCGTGT 957
||||||||||||| ||||| ||||||||| || |||||||| |||||| ||||||||
Sbjct 945 AAAGATGATGATGGTGAAGAGTCAAAGGAGGTAGTGGAGAAGGTGAAAACACCGTCGTGT 1004
Query 958 TGGAGGACTGT 968
|||| ||||||
Sbjct 1005 TGGACGACTGT 1015
Score = 1242 bits (672), Expect = 0.0
Identities = 726/753 (96%), Gaps = 0/753 (0%)
Strand=Plus/Plus
Query 979 ACGATATGTGGTGTGGGAGGGACTTTGACGGCGATAGACAATTTGGGTCAAATCGGAGAC 1038
||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1098 ACGATATGTGGCGTAGGAGGGACTTTGACGGCGATAGACAATTTGGGTCAAATCGGAAAC 1157
Query 1039 TCGTTGGGTTACCCGAAGAGAAGCGTAAGCACGTTTGTGTCACTCGTAAGCATATGGAAT 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TCGTTGGGTTACCCGAAGAGAAGCGTAAGCACGTTTGTGTCACTCGTAAGCATATGGAAT 1217
Query 1099 TACTATGGTCGTGTGGTTTCAGGTGTGGTCTCTGAGATCTTCTTGATCAAATACAAATTT 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TACTATGGTCGTGTGGTTTCAGGTGTGGTCTCTGAGATCTTCTTGATCAAATACAAATTT 1277
Query 1159 CCAAGACCTTTAATGCTCACAATGGTCCTCCTCTTGTCCTGCGCTGGTCATCTCCTCATC 1218
||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1278 CCAAGGCCTTTAATGCTCACGATGGTCCTCCTCTTGTCCTGCGCGGGTCACCTCCTCATC 1337
Query 1219 GCTTTTAATGTCCCCGGTGGACTCTATGTCGCATCGGTCATCATAGGGTTTTGTTTCGGT 1278
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1338 GCCTTTAATGTCCCCGGTGGACTTTATGTCGCATCGGTCATCATAGGGTTTTGTTTTGGT 1397
Query 1279 GCGCAATGGCCGCTTCTATTTGCAATAATATCCGAGATTTTCGGGCTTAAGTACTACTCG 1338
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1398 GCGCAATGGCCTCTTCTATTTGCTATAATATCTGAGATTTTCGGGCTTAAGTACTACTCG 1457
Query 1339 ACGTTGTATAACTTCGGGTCAGTCGCGAGCCCGATCGGGTCTTACTTACTCAACGTTCGG 1398
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1458 ACATTGTATAACTTCGGGTCAGTCGCGAGCCCGATCGGGTCTTACTTGCTAAACGTTCGG 1517
Query 1399 GTCGCAGGGTATTTGTACGACGTGGAGGCGGGTAAGCAATATAAGGCATTAGGGAAAACG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GTCGCAGGGTATTTGTACGACGTGGAGGCGGGTAAGCAATATAAGGCATTAGGGAAAACG 1577
Query 1459 AGAGTAGAAGGGCAAGATTTGAATTGCATAGGCACGTCTTGTTTTAAGTTGTCTTTTATA 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AGAGTAGAAGGGCAAGATTTGAATTGCATAGGCACGTCTTGTTTTAAGTTGTCTTTTATA 1637
Query 1519 ATAATTACTGCGGTAACTTTGTTTGGTGTATTGGTCTCGATGGTTTTGGTGATCCGGACC 1578
|||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1638 ATAATTGCCGCTGTAACTTTGTTCGGTGTATTGGTCTCGATGGTTTTGGTGATCCGGACC 1697
Query 1579 AAGAAGTTTTACAAAAGTGATATCTACAAAAAGTTTAGAGAAAAAGCGTTGGCTGCCGAG 1638
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1698 AAGAAGTTTTACAAGAGTGATATCTACAAAAAGTTTAGAGAAAAAGCGTTAGCTGCCGAG 1757
Query 1639 ATGGAGATGGCAGCACCGGCTGCGGCCAGATCTACCGTGGCGGAGGAAGACAAGGATGAT 1698
|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1758 ATGGAGATGGCAGCGCCGGCTGCAGCCAGATCTACCGTGGCTAAGGAAGACAAGGATGAT 1817
Query 1699 GTTAAAGGCAAAGTAATAGGCAAAGGAGGGTAA 1731
|||||||||||||||||||| ||||||||||||
Sbjct 1818 GTTAAAGGCAAAGTAATAGGAAAAGGAGGGTAA 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85591929225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5