BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902143
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41680.1 | Symbols: NTRC | NADPH-dependent thioredoxin reduc... 2649 0.0
> AT2G41680.1 | Symbols: NTRC | NADPH-dependent thioredoxin reductase
C | chr2:17376155-17379055 REVERSE LENGTH=1811
Length=1811
Score = 2649 bits (1434), Expect = 0.0
Identities = 1545/1598 (97%), Gaps = 10/1598 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGCGTCTCCCAAGATAGGCATCGGAATTGCCTCCGTCTCctcgtctcaccgcgtc 60
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||
Sbjct 28 ATGGCTGCGTCTCCCAAGATAGGCATCGGTATTGCCTCCGTCTCATCGCCTCACCGTGTC 87
Query 61 tccgccgcctcatccgctctttctcctccgt-atcatctcttctctctcaGCactactac 119
||||||||||||||||||||||||||||| | ||||||||||| | || |||||||||
Sbjct 88 TCCGCCGCCTCATCCGCTCTTTCTCCTCC-TCCTCATCTCTTCT-T-TC-TCACTACTAC 143
Query 120 tactactactacACGTCACGGCGGCTCCT-TCCTTCTCCGTCAACCAACCCGAACTCGCT 178
|||||| | ||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 144 TACTAC--C-ACACGTCACGGCGGCTCCTAT-CTCCTCCGTCAACCAACCCGAACTCGCT 199
Query 179 CTTCCGATTCCCTCCGCCTCAGAGTCTCCGCCACCGCCAATTCGACGTCTTCTTCTTCAG 238
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 200 CTTCTGATTCCCTCCGCCTCAGAGTCTCCGCCACCGCCAATTCTCCGTCTTCTTCTTCTT 259
Query 239 GAGCAGGCGAGATTATCGAGAATGTAGTGATTATAGGCTCAGGTCCGGCCGGTTATACGG 298
|| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 260 CAGGAGGCGAGATTATCGAGAATGTAGTGATTATAGGCTCCGGTCCCGCCGGTTATACGG 319
Query 299 CGGCGATATATGCAGCGCGCGCCAATTTGAAGCCGGTGGTTTTTGAAGGGTATCAGATGG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 CGGCGATATATGCAGCGCGCGCCAATTTGAAGCCGGTGGTTTTTGAAGGGTATCAGATGG 379
Query 359 GCGGAGTTCCCGGTGGACAGTTGATGACAACCACTGAAGTTGAGAATTTTCCAGGATTCC 418
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 380 GCGGAGTTCCCGGTGGACAGTTGATGACAACTACTGAAGTTGAGAATTTTCCGGGATTCC 439
Query 419 CAGACGGTATTACGGGGCCGGATTTAATGGAGAAAATGAGAAAGCAAGCTGAGAGATGGG 478
|||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 440 CAGACGGTATCACGGGTCCCGATTTAATGGAGAAAATGAGAAAGCAAGCAGAGAGGTGGG 499
Query 479 GAGCAGAGTTGTATCCAGAAGATGTTGAATCTCTTAATGTCACAACTGCTCCTTTTACTG 538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 500 GAGCAGAGTTGTATCCAGAAGATGTTGAATCTCTTAGTGTCACAACTGCTCCTTTTACTG 559
Query 539 TGCAAACTAGTGAACGTAAGGTCAAGTGCCATAGTATTATATATGCCACTGGAGCTACAG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 560 TGCAAACTAGTGAACGTAAGGTCAAGTGCCATAGTATTATATATGCCACTGGCGCTACAG 619
Query 599 CAAGGAGGTTAAGGTTACCTCGAGAGGAAGAGTTCTGGAGTAGGGGGATAAGTGCTTGTG 658
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 620 CAAGGAGGTTAAGGTTACCTCGAGAGGAAGAATTCTGGAGTAGGGGGATAAGTGCTTGTG 679
Query 659 CAATCTGTGATGGAGCTTCTCCTTTATTTAAGGGGCAAGTACTTGCCGTGGTTGGAGGAG 718
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CTATCTGTGATGGAGCTTCGCCTTTATTTAAGGGGCAAGTACTTGCCGTGGTTGGAGGAG 739
Query 719 GAGATACGGCTACAGAGGAAGCCTTGTACCTTACGAAATATGCCCGTCATGTTCATTTGC 778
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 740 GAGATACGGCTACAGAGGAAGCCTTGTATCTCACGAAATATGCCCGTCATGTTCATTTGC 799
Query 779 TTGTTCGCAGAGACCAGTTGAGAGCTTCCAAGGCTATGCAAGATAGAGTGATCAACAATC 838
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TTGTTCGCAGAGATCAGTTGAGAGCTTCCAAGGCTATGCAAGATAGAGTGATCAACAATC 859
Query 839 CAAACATCACAGTGCATTACAACACGGAAACCGTGGACGTATTGAGCAACACCAAGGGAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 CAAACATCACAGTGCATTACAACACGGAAACCGTGGACGTATTGAGCAACACCAAGGGAC 919
Query 899 AGATGTCTGGCATTCTACTCAGAAGACTTGATACGGGTGAAGAAACCGAGCTGGAGGCAA 958
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 920 AGATGTCTGGCATTCTACTCAGAAGACTTGATACGGGTGAAGAAACTGAGCTGGAGGCAA 979
Query 959 AAGGATTGTTTTATGGAATAGGGCATTCGCCAAACAGTCAGTTATTGGAAGGCCAAGTCG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 AAGGATTGTTTTATGGAATAGGGCATTCGCCAAACAGTCAGTTATTGGAAGGCCAAGTCG 1039
Query 1019 AACTCGACAGCTCGGGGTACGTCTTGGTTCGGGAAGGAACATCAAATACATCAGTTGAAG 1078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AACTCGACAGCTCCGGGTACGTCTTGGTTCGGGAAGGAACATCAAATACATCAGTTGAAG 1099
Query 1079 GCGTATTTGCTGCAGGAGATGTGCAGGACCATGAATGGAGACAAGCTGTAACTGCTGCGG 1138
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1100 GTGTATTTGCTGCAGGAGATGTGCAGGACCACGAATGGAGACAAGCTGTAACTGCTGCTG 1159
Query 1139 GATCAGGATGCATAGCTGCTTTGTCAGCCGAGAGATACCTCACAAGTAACAATCTTCTTG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GATCAGGATGCATAGCTGCTTTGTCAGCCGAGAGATACCTCACAAGTAACAATCTTCTTG 1219
Query 1199 TTGAATTTCACCAGCCTCAAACTGAAGAGGCCAAGAAAGAATTCACACAACGCGATGTCC 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1220 TTGAATTTCACCAGCCTCAAACTGAAGAGGCCAAGAAAGAATTCACACAACGGGATGTCC 1279
Query 1259 AAGAAAAGTTTGACATCACTCTTACAAAGCATAAGGGACAGTATGCTCTTAGAAAATTAT 1318
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1280 AAGAAAAGTTTGACATCACTCTTACAAAGCACAAGGGACAGTATGCTCTTAGAAAACTAT 1339
Query 1319 ACCATGAGAGTCCAAGAGTTATATTGGTACTATACACTTCACCAACGTGTGGCCCCTGTA 1378
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1340 ACCATGAGAGTCCAAGAGTTATATTGGTACTATACACTTCACCAACATGTGGCCCCTGTA 1399
Query 1379 GGACTCTGAAGCCTATTTTGAACAAGGTGGTCGATGAGTATAACCATGATGTGCATTTTG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 GGACTCTGAAGCCTATTTTGAACAAGGTGGTCGATGAGTATAACCATGATGTGCATTTTG 1459
Query 1439 TTGAGATTGACATTGAGGAAGATCAAGAAATTGCTGAAGCAGCTGGAATCATGGGAACCC 1498
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1460 TTGAGATTGACATCGAGGAAGATCAAGAAATTGCTGAAGCAGCTGGAATTATGGGAACCC 1519
Query 1499 CATGTGTGCAGTTCTTCAAGAACAAGGAAATGCTCAGGACTATATCGGGTGTGAAGATGA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 CATGTGTGCAGTTCTTCAAGAACAAGGAAATGCTCAGGACTATATCGGGTGTGAAGATGA 1579
Query 1559 AGAAAGAGTACCGGGAATTCATTGAGGCCAATAAATGA 1596
||||||||||||| ||||||||||||||||||||||||
Sbjct 1580 AGAAAGAGTACCGAGAATTCATTGAGGCCAATAAATGA 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5