BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg902253 Length=420 Score E Sequences producing significant alignments: (Bits) Value AT2G42540.2 | Symbols: COR15A, COR15 | cold-regulated 15a | chr... 604 2e-172 AT2G42530.1 | Symbols: COR15B | cold regulated 15b | chr2:17709... 431 3e-120 > AT2G42540.2 | Symbols: COR15A, COR15 | cold-regulated 15a | chr2:17711032-17712092 REVERSE LENGTH=755 Length=755 Score = 604 bits (327), Expect = 2e-172 Identities = 391/422 (93%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 1 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAGCGGA 60 ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 127 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCACTGGTATGGCTTCTTCTTTCCACAGCGGA 186 Query 61 GCCAAGCAGA-CCGGTATTGGGGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTCGT 119 |||||||||| | | | | || |||||||||||||||||||||||||||||||||||||| Sbjct 187 GCCAAGCAGAGCAGCT-TCGGCGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTCGT 245 Query 120 TTCTCAGCGCAAGAAGTCGTTGATCTACGCCGCTAAAAGTGACGGCAACATCCTCGATGA 179 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 246 TTCTCAACGCAAGAAGTCGTTGATCTACGCCGCTAAAGGTGACGGCAACATCCTCGATGA 305 Query 180 CCTCAACCAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAAGCGTT 239 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 306 CCTCAACGAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAGGCATT 365 Query 240 GGCAGATGGCGAGAAAGC-AAAGGACTACGTTGTTGAAAAAACCAGTGAAAACGCAGATA 298 |||||||| |||||||| |||| |||||||||||||||||| |||||||| |||||||| Sbjct 366 AGCAGATGGTGAGAAAGCGAAAG-ACTACGTTGTTGAAAAAAACAGTGAAACCGCAGATA 424 Query 299 CATTGGGTAAAGAAGCTGAGAAAGCTTCGGAGTACGCGGATGAGAAAGGAAAAGAAGCTG 358 |||||||||||||||||||||||||| ||| ||| | ||| ||||||||||||||||| | Sbjct 425 CATTGGGTAAAGAAGCTGAGAAAGCTGCGGCGTATGTGGAGGAGAAAGGAAAAGAAGCCG 484 Query 359 CGAACAAGGCCGCTGAGTTCGCAGAGGGTAAAGCAGGAGACGCTAAGGATGCCACAAAGT 418 | |||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 485 CAAACAAGGCGGCAGAGTTCGCGGAGGGTAAAGCAGGAGAGGCTAAGGATGCCACAAAGT 544 Query 419 AG 420 || Sbjct 545 AG 546 > AT2G42530.1 | Symbols: COR15B | cold regulated 15b | chr2:17709036-17709945 REVERSE LENGTH=653 Length=653 Score = 431 bits (233), Expect = 3e-120 Identities = 364/426 (85%), Gaps = 13/426 (3%) Strand=Plus/Plus Query 1 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAGCG-- 58 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 73 ATGGCGATGTCTTTATCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAACGTA 132 Query 59 G-AGCCAAGCAGACCGGTATTGGGGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTC 117 | ||| ||||||| ||| |||| | |||||||| |||| ||| | | || |||||||| Sbjct 133 GGAGCAAAGCAGAGTGGTGTTGGTACCGTCAGAGTTGGCCGGAAGAGTGAGCTCGTCGTC 192 Query 118 GTTTCTCAGCGCAAGAAGTCGTTGATCTACGCCGCTAAAAGTGACGGCAACATCCTCGAT 177 ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 193 GTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAAGTGACGGCAACATCCTCGAT 252 Query 178 GACCTCAACCAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAAGCG 237 ||||||||| | ||||||||||||||||| ||||||||||||||||| || || || || Sbjct 253 GACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACGAAGGAGGCC 312 Query 238 TTGGCAGATGGCGAGAAAGCAAAGGACTACGTTGTTGAAAAAACCAGTGAAAACGCAGAT 297 ||||| |||||||||||| |||| |||||| ||||||| ||||||| |||| | || || Sbjct 313 TTGGCGGATGGCGAGAAAACAAAAGACTACATTGTTGAGAAAACCATTGAAG-C-CA-AT 369 Query 298 -ACATTGGG--TAAAGAAGCTGAGAAAGCTTCGGAGTACGCGGA-TGAGAAAGGAAAAGA 353 | | || | | | |||||| ||||||||| ||| || | | | ||||||||||||||| Sbjct 370 GAAACTGCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTG-ACTGAGAAAGGAAAAGA 428 Query 354 AGCTGCGAA-CAAGGCCGCTGAGTTCGCAGAGGGTAAAGCAGGAGACGCTAAGGATGCCA 412 ||| | ||| |||||| |||||||||| |||||||||||||| ||| |||||| |||||| Sbjct 429 AGCCG-GAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGAAGAGGCTAAGAATGCCA 487 Query 413 CAAAGT 418 |||||| Sbjct 488 CAAAGT 493 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19906028604 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5