BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902342
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43360.1 | Symbols: BIO2, BIOB | Radical SAM superfamily pro... 470 9e-132
> AT2G43360.1 | Symbols: BIO2, BIOB | Radical SAM superfamily protein
| chr2:18010751-18013238 REVERSE LENGTH=1413
Length=1413
Score = 470 bits (254), Expect = 9e-132
Identities = 303/326 (93%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 324 GATGATTTGGAACCGCACTTATTGTAATGCCAAAGGCAATGGTGAGATTATCTGCTGGTA 383
||||| |||||||||||| ||||||||||||||| || ||||||||| | ||||||||||
Sbjct 973 GATGA-TTGGAACCGCACGTATTGTAATGCCAAAAGCGATGGTGAGACTGTCTGCTGGTA 1031
Query 384 GAGTCCGGTTCTCAATGGCGGAGCAGGCCCTGTGTTTCCTTGCTGGTGCAAACTCTATCT 443
||||||||||||||||| | || || || || ||||||||||||||||||||||||||||
Sbjct 1032 GAGTCCGGTTCTCAATGTCCGAACAAGCTCTCTGTTTCCTTGCTGGTGCAAACTCTATCT 1091
Query 444 TCACCGGAGAGAAGCTTTTAACCACACCAA-CAATGTTTTTGATTCTGACCAGCTCATGT 502
|||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct 1092 TCACCGGAGAGAAGCTTTTAACCACACCAAACAATGATTTTGACGCTGACCAGCTCATGT 1151
Query 503 CCAAGACATTAGGCATCATTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAG 562
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TCAAGACATTAGGCCTCATTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAG 1211
Query 563 AAAAACTGCGAGAAAGTTGCTTCCGCTTCTCACTAATATCATTATCCACtttttttt--- 619
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 AAAA-CTGCGAGAAAGTTGCTTCCGCTTCTCACTAATATCATTATCCACTTTTTTTTTTT 1270
Query 620 GTTTGGAGTCGGGACACTATAAAGCA 645
||||||||||||||||||||| ||||
Sbjct 1271 GTTTGGAGTCGGGACACTATAGAGCA 1296
Score = 449 bits (243), Expect = 1e-125
Identities = 285/306 (93%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGTTTGCTGCACCTTGGGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAA 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 611 ATGGAAGTTTGCTGCACCTTAGGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAG 670
Query 61 GCTGGATTCACTGCCTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTC 120
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GCTGGCCTCACTGCTTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTC 730
Query 121 ATCACTACTAGAAGTTATGACAACCGCTTTGAAACTCTTGGGCATGTTCGTGAAGCTGGA 180
||||||||||||||||||||| | ||| ||||||||||| | ||||||||||| ||||||
Sbjct 731 ATCACTACTAGAAGTTATGACGATCGCCTTGAAACTCTTAGCCATGTTCGTGATGCTGGA 790
Query 181 ATCAATGTCTGTTCAGGTGGAATCATAGGGCTTGGAGAGGCAGAGGAAGACAGAGTAGGT 240
||||| || |||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 791 ATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGTGAGGCAGAGGAAGACAGAATAGGT 850
Query 241 TTATTACACACACTAGCAACACCTCCTGCTCACCCTGAGAGTGTTCCCATTAATGCTCTG 300
||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 851 TTATTACACACGCTGGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAATGCTCTA 910
Query 301 CTTGCA 306
||||||
Sbjct 911 CTTGCA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5