BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg902559 Length=1407 Score E Sequences producing significant alignments: (Bits) Value AT2G45270.1 | Symbols: GCP1 | glycoprotease 1 | chr2:18666526-1... 2076 0.0 > AT2G45270.1 | Symbols: GCP1 | glycoprotease 1 | chr2:18666526-18669873 FORWARD LENGTH=2041 Length=2041 Score = 2076 bits (1124), Expect = 0.0 Identities = 1261/1328 (95%), Gaps = 5/1328 (0%) Strand=Plus/Plus Query 78 TAAACTTAGAACCAAAATCCCGACTTTCTCCTTAATCTCTCCTTCATCTTCACCCAATTT 137 ||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 168 TAAGCTTAAAACCAAAACCCCGACTTTCTCGTTAATCTCTCCTTCATCTTCACCCAATTT 227 Query 138 TCAAAGGACACGTTTTTATTCTACCGGAACAAGAATCTACTACTCGTTACCCAATAGCGA 197 |||||||||||||||||||||||||| ||||||||| | | ||| |||||| ||||||| Sbjct 228 TCAAAGGACACGTTTTTATTCTACCGAAACAAGAAT-T--TCCTCCTTACCCTATAGCGA 284 Query 198 AAATTCGAATTTTGATGATAATTTGGTTGTTCTGGGTATTGAAACGAGCTGCGACGACAC 257 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 285 AAACCCGAATTTTGATGATAATTTGGTTGTTCTGGGTATTGAAACGAGCTGCGACGACAC 344 Query 258 TGCCGCAGCTGTTGTGAGAAGTAATGGTGAAATTCTCAGTCAAGTCATTTCTTCTCAGGC 317 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 345 TGCCGCAGCTGTTGTGAGAGGTAATGGTGAAATTCTCAGTCAAGTCATTTCTTCTCAGGC 404 Query 318 AGAATTGCTTGCCCAATATGGAGGCGTCGCTCCTAAACAGGCTGAAGAAGCACACTCCCA 377 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 AGAATTGCTTGTCCAATATGGAGGCGTCGCTCCTAAACAGGCTGAAGAAGCACACTCCCG 464 Query 378 AGTTATCGATAAGGTTGTGCAAGACGCGCTTGATAGAGCCAGTTTGACCGAGAAGGATCT 437 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 465 AGTTATCGATAAGGTTGTGCAAGACGCGCTTGATAAAGCCAATTTGACCGAGAAGGATCT 524 Query 438 CTCTGCTGTTGCTGTTACCATTGGACCTGGTTTGAGCCTCTGTCTACGCGTTGGTGTGCG 497 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 525 CTCTGCTGTTGCTGTTACCATTGGACCTGGTTTGAGCCTCTGTCTACGTGTTGGTGTGCG 584 Query 498 AAAGGCTCGTAGCGTTGCTGGTAACTTCAGTCTCCCAATTGTCGGGGTGCATCACATGGA 557 |||||| | || |||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 585 CAAGGCTAGAAGAGTTGCTGGTAACTTCAGTCTCCCAATCGTTGGGGTGCATCACATGGA 644 Query 558 GGCTCATGCCCTTGTAGCTAGGTTAGTAGAGCAAGAATTAAGCTTTCCGTTCATGGCATT 617 ||||||||| || || ||||| ||||| || |||||||||||||| || ||||||||||| Sbjct 645 GGCTCATGCTCTCGTTGCTAGATTAGTGGAACAAGAATTAAGCTTCCCTTTCATGGCATT 704 Query 618 GCTTATATCAGGAGGGCACAATCTGCTAGTTCTTGCGCATAAGCTTGGTCAGTACACACA 677 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 705 GCTTATATCAGGAGGGCACAATCTTCTAGTTCTTGCGCATAAGCTTGGTCAGTACACACA 764 Query 678 ACTTGGGACTACAGTAGATGATGCTATAGGTGAGGCATTTGACAAGACAGCAAAATGGCT 737 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 765 ACTTGGGACTACAGTAGATGATGCTATAGGTGAGGCATTTGACAAGACAGCTAAATGGCT 824 Query 738 CGGTCTTGATATGCGCAGGAGTGGTGGACCAGCTGTTGAAGAACTTGCTCTGGAGGGTGA 797 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 825 CGGCCTCGATATGCACAGGAGTGGTGGACCAGCTGTTGAAGAACTTGCTCTGGAGGGTGA 884 Query 798 TGCAAAGTCTGTTAAGTTTAATGTTCCAATGAAATATCATAAAGATTGCAACTTTTCTTA 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 TGCAAAGTCTGTTAAGTTTAATGTTCCAATGAAATATCATAAAGATTGCAACTTTTCTTA 944 Query 858 TGCTGGTTTGAAGACACAAGTGAGGCTAGCCATTGAAGCCAAAGAAATCGATGCTAAATG 917 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 945 TGCTGGTTTGAAGACACAAGTGAGGCTAGCCATTGAAGCCAAAGAAATTGATGCTAAATG 1004 Query 918 TCCTGTCTCTTCTGCAACAAACGAAGACAGAAGAAACCGTGCTGATATCGCCGCTTCTTT 977 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1005 TCCCGTCTCTTCTGCAACAAACGAAGACAGAAGAAACCGTGCTGATATTGCCGCTTCTTT 1064 Query 978 CCAGCGAGTAGCTGTCTTGCATCTGGAGGAAAAGTGTGAGCGAGCAATAGACTGGGCACT 1037 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | Sbjct 1065 CCAGCGAGTAGCTGTCTTGCATCTGGAAGAAAAATGTGAGCGAGCAATAGACTGGGCA-T 1123 Query 1038 T-GAACTCGAGCCTTCTATAAAACATATGGTAGTCTCTGGTGGTGTTGCTTCAAACAAGT 1096 | ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 1124 TAGAACTAGAGCCTTCTATTAAACATATGGTAATCTCTGGTGGTGTTGCTTCAAACAAGT 1183 Query 1097 ATGTACGACTCCGACTCAATAATATTGTCGAAAACAAAAACCTGAAACTTGTTTGCCCTC 1156 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1184 ATGTACGACTCCGACTTAATAACATTGTCGAAAACAAAAACCTGAAACTTGTTTGCCCTC 1243 Query 1157 CTCCTAGCCTTTGCACAGACAATGGAGTAATGGTGGCTTGGACTGGTCTCGAGCATTTCC 1216 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1244 CTCCTAGCCTCTGCACAGACAATGGAGTAATGGTGGCTTGGACTGGTCTCGAGCATTTTC 1303 Query 1217 GTGTAGGAAGATACGATCCACCTCCACCTGCAACTGAACCTGATGATTTTGTGTATGATC 1276 ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1304 GTGTAGGAAGATATGATCCACCTCCACCTGCAACTGAACCTGAGGATTATGTGTATGATC 1363 Query 1277 TTCGACCAAGGTGGCCTCTTGGAGAGGAGTATACAAAAGGAAGAAGCAAAGCTCGTTCTA 1336 ||||||| |||||||||||||| ||||||||| | |||||||||||| |||||||||||| Sbjct 1364 TTCGACCGAGGTGGCCTCTTGGCGAGGAGTATGCGAAAGGAAGAAGCGAAGCTCGTTCTA 1423 Query 1337 TGAGAACTGCGCGGATTCACCCGTCACTTACTTCAATTATCCGTGCAGATTCTCTTCAAC 1396 |||||||||| ||||| || ||||||||||||||||| || | |||||||||||||||| Sbjct 1424 TGAGAACTGCACGGATCCATCCGTCACTTACTTCAATCATTAGAGCAGATTCTCTTCAAC 1483 Query 1397 AACAAACA 1404 |||||||| Sbjct 1484 AACAAACA 1491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69326952645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5