BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903224
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04030.3 | Symbols: | Homeodomain-like superfamily protein ... 1934 0.0
AT5G18240.1 | Symbols: MYR1, ATMYR1 | myb-related protein 1 | c... 977 0.0
AT5G18245.1 | Symbols: | other RNA | chr5:6028285-6033231 FORW... 122 5e-27
> AT3G04030.3 | Symbols: | Homeodomain-like superfamily protein
| chr3:1042882-1044697 REVERSE LENGTH=1346
Length=1346
Score = 1934 bits (1047), Expect = 0.0
Identities = 1140/1186 (96%), Gaps = 2/1186 (0%)
Strand=Plus/Plus
Query 1 ATGTATTACCAAAACCAGCACCAAGGAAAGAACGTCCTCTCTTCTTCGAGAATGCATATA 60
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 124 ATGTATTACCAAAACCAGCACCAAGGAAAGAACATCCTCTCATCTTCAAGAATGCATATA 183
Query 61 ACTTCTGAAAGGCATCCATTCCTTAGAGGGAATAGTCCAGGAGATTCTGGACTCATCCTT 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 184 ACTTCTGAAAGGCATCCATTCCTTAGAGGGAATAGTCCAGGTGATTCTGGACTTATCCTA 243
Query 121 TCAACCGATGCAAAGCCGCGCCTAAAATGGACTCCAGATCTTCATGAGAGATTCATCGAA 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 244 TCAACCGATGCAAAGCCACGCCTAAAATGGACTCCAGATCTTCATGAGAGATTCATTGAA 303
Query 181 GCGGTCAATCAACTCGGTGGAGCAGATAAAGCTACCCCTAAGACAATCATGAAAGTCATG 240
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 304 GCAGTCAATCAACTCGGTGGAGCAGATAAAGCTACTCCTAAGACAATCATGAAAGTCATG 363
Query 241 GGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAATACAGGTTGAGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 364 GGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAATACAGGCTGAGC 423
Query 301 AAGAATCTCAACGGACAAGCTAACAGCAGCTTCAACAAAATAGGTATGATGACCATGTTG 360
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||
Sbjct 424 AAGAATCTCAACGGACAAGCTAACAACAGCTTCAACAAAATAGGTATAATGACCATGATG 483
Query 361 GAAGAACAGACTCCTGATGCAGACGAAAGTCAAAGCGAGAGTTTAAGCATTGGACCACAG 420
|||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 484 GAAGAAAAGACTCCTGATGCAGACGAAATTCAAAGCGAGAATTTAAGCATTGGACCACAG 543
Query 421 CCTAACAAGAACTCGCCAATAGGTGAAGCACTGCAGATGCAAATAGAGGTCCAAAGAAGG 480
|| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 544 CCAAACAAGAATTCACCAATAGGTGAAGCACTGCAAATGCAAATAGAGGTCCAAAGAAGG 603
Query 481 CTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGAGGCTCAAGGGAAG 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 604 CTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTTAGGATAGAGGCTCAAGGGAAG 663
Query 541 TACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAAACAGAACCTCGGTGCA 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 664 TACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAGACAGAACCTCGGTGCA 723
Query 601 GCAGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAATTAGTATCTAAAGTATCAGCAGAA 660
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 724 GCTGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAACTAGTATCTAAAGTATCAGCAGAG 783
Query 661 TACCCAAACTCTAGTATCCTAGAACCAAAAGAACTTCAAAACCTATGCTCACAACAGATG 720
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TACCCAAACTCTAGTTTCCTAGAACCAAAAGAACTTCAAAACCTATGCTCACAACAGATG 843
Query 721 CAAACAACCTATCCACCAGATTGCTCTCTAGAAAGTTGCCTGACCTCAAGCGAGGGAACA 780
||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 844 CAAACAAACTATCCACCTGATTGCTCTCTTGAAAGTTGCCTGACCTCAAGCGAGGGAACG 903
Query 781 CAGAAAAACCT-GAAAATGCTAGAGAACAACAGATTAGGACTAAGAACATATCTTGGTGA 839
|||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 904 CAGAAAAA-CTCGAAAATGCTAGAGAACAACAGATTAGGACTAAGAACGTATATTGGTGA 962
Query 840 TTCAACATCCGAGCAGAAAGAGATTATGGAAGAACAATTGTTCCAAAGAAGGGAGCTCAC 899
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 963 TTCAACATCGGAGCAGAAAGAGATTATGGAAGAACCATTGTTCCAAAGAATGGAGCTCAC 1022
Query 900 ATGGACAGAAGGTCTAAGAGGGAATCCATATCTTTCAGCAATGGTGAGTGAAGCAGAACA 959
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1023 ATGGACAGAAGGTCTAAGAGGGAATCCATATCTTTCAACAATGGTGAGTGAAGCAGAACA 1082
Query 960 AAGAATCTCATATTCAGAAAGAAGTCCAGGTAGATTATCAATAGGAGTAGGATTGCACGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AAGAATCTCATATTCAGAAAGAAGTCCAGGTAGATTATCAATAGGAGTAGGATTGCACGG 1142
Query 1020 ACACAAAAGTCAACATCAACAAGGCAACAATGAGGACCATAAGTTTGAAACACGAAGCCG 1079
||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||
Sbjct 1143 ACACAAAAGCCAACATCAACAAGGCAACAATGAGGATCATAAGCTTGAAACACGAAACCG 1202
Query 1080 GAAAGGCATGGATTCAACAACAGAGCTAGATCTCAACACACATGTTGAAAACTTTTGTAC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1203 GAAAGGCATGGATTCAACAACAGAGCTAGATCTCAACACACATGTTGAAAACTATTGTAC 1262
Query 1140 AAAGCGTACGAAACAGTTTGACTTGAATGGTTTCAGCTGGAACTGA 1185
|| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1263 AACGCGTACGAAACAGTTCGACTTGAATGGTTTCAGCTGGAACTGA 1308
> AT5G18240.1 | Symbols: MYR1, ATMYR1 | myb-related protein 1 |
chr5:6028285-6030802 REVERSE LENGTH=1688
Length=1688
Score = 977 bits (529), Expect = 0.0
Identities = 878/1045 (84%), Gaps = 30/1045 (3%)
Strand=Plus/Plus
Query 1 ATGTATTACCAAAACCAGCACCAAGGAAAGAACGTCCTCTCTTCTTCGAGAATGCATATA 60
||||||||||| ||||||||||||||||||| | |||||||||| |||||||||| ||
Sbjct 148 ATGTATTACCACAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCGAGAATGCCCATT 207
Query 61 ACTTCTGAAAGGCATCCATTCCTTAGAGGGAATAGTC-CAGGAGATTCTGGACTCATCCT 119
|||||||||||||||| ||||| ||||| ||| | | ||||||||||||||||||| ||
Sbjct 208 TCTTCTGAAAGGCATCCGTTCCTCAGAGGAAAT-GGCACAGGAGATTCTGGACTCATTCT 266
Query 120 TTCAACCGATGCAAAGCCGCGCCTAAAATGGACTCCAGATCTTCATGAGAGATTCATCGA 179
|| || ||||||||||| || ||||||||||||||||||||||| |||||||| | ||
Sbjct 267 CTCCACTGATGCAAAGCCACGACTAAAATGGACTCCAGATCTTCACGAGAGATTTGTTGA 326
Query 180 AGCGGTCAATCAACTCGGTGGAGCAGATAAAGCTACCCCTAAGACAATCATGAAAGTCAT 239
||||||||| || || || |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 327 AGCGGTCAACCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAATCATGAAAGTCAT 386
Query 240 GGGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAATACAGGTTGAG 299
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||
Sbjct 387 GGGCATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAAATATAGGCTAAG 446
Query 300 CAAGAATCTCAACGGACAAGCTAACAGCAGCTTCAACAAAATAGGTATGATGACCATGTT 359
||||||||| || ||||||||||||||||| || ||||| | | || ||||||||||| |
Sbjct 447 CAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGTGATGACCATGGT 506
Query 360 GGAAGAACAGACTCCTGATGCAGACGAAAGTCAAAGCGAGAGTTTAAGCATTGGACCACA 419
|||||| | | ||||| | |||||||||||| || |||||||||||||||||||||||
Sbjct 507 AGAAGAAAACCCCCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAGCATTGGACCACA 566
Query 420 GCCTAACAAGAACTCGCCAATAGGTGAAGCACTGCAGATGCAAATAGAGGTCCAAAGAAG 479
||| | || ||||| || ||| |||| || || || ||||||||||||||||| ||| |
Sbjct 567 GCCGAGCATGAACTTACCCATAAGTGATGCCCTTCAAATGCAAATAGAGGTCCAGAGACG 626
Query 480 GCTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGAGGCTCAAGGGAA 539
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 627 GCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGAGGCTCAAGGAAA 686
Query 540 GTACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAAACAGAACCTCGGTGC 599
||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 687 GTACCTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACAGAACCTAGGTGC 746
Query 600 AGCAGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAATTAGTATCTAAAGTATCAGCAGA 659
||| ||||| ||||| | |||| ||||||||| ||||||||||||||||||||||||||
Sbjct 747 AGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAAAGTATCAGCAGA 806
Query 660 ATACCCAAACTCTAGTATCCTAGAACCAAAAGAACTTCAAAACCTATGCTCA-CAACAGA 718
|| ||| |||||||| |||| ||||| |||||||| || || ||| | || |||||||
Sbjct 807 CTATCCAGACTCTAGTTTCCTCGAACCGAAAGAACTGCAGAATCTACAC-CATCAACAGA 865
Query 719 TGCAAACAACCTATCCACC-AGATTGCTCTCTAGAAAGTTGCCTGACCTCAAGCGAGGGA 777
|||||| ||| |||||||| | | | ||| || || |||||||| |||||||| || |||
Sbjct 866 TGCAAAAAACGTATCCACCTA-ACTCCTCCCTGGACAGTTGCCTAACCTCAAGTGAAGGA 924
Query 778 ACACAGAAAAACCTGAAA-ATGCTAGAGAACAACAGATTAGGACTAAGAACATATCTTGG 836
|| |||||| || ||| ||||| || ||||||| | ||| ||||||||||| ||||
Sbjct 925 ACTCAGAAAGCCCC-AAAGATGCTTGA---CAACAGACTGGGATTAAGAACATATATTGG 980
Query 837 TGATTCAACATCCGAGCAGAAAGAGATTATGGAAGAACAATTGTTCCAAAGAAGGGAGCT 896
|||||||| || |||||||||||||| |||||||| | ||| ||||| |||| ||||||
Sbjct 981 AGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAGCCATTCTTCCATAGAATGGAGCT 1040
Query 897 CACATGGACAGAAG--GT---C-TAAGAGGGAATC-CA--------TATCTTTCAGCAAT 941
||||||| |||||| | | | |||| ||||| || ||||||||| ||||
Sbjct 1041 CACATGGGCAGAAGAAGAAAGCCTCAGAGAGAATCACAACAGGCCATATCTTTCAACAAT 1100
Query 942 GGTGAGTGAA-GCAGAACAAAGAATCTCATATTCA-GAAAGAAGTCCAGGTAGATTATCA 999
||| | || ||||||| |||||||| | |||| ||| ||||||| || ||||| |||
Sbjct 1101 GGTTAAC-AACGCAGAACCGAGAATCTCGTCTTCAAGAA-GAAGTCCTGGAAGATTGTCA 1158
Query 1000 ATAGGAGTAGGATTGCACGGACACA 1024
|||||||| ||||| || | |||||
Sbjct 1159 ATAGGAGTGGGATTACATGAACACA 1183
> AT5G18245.1 | Symbols: | other RNA | chr5:6028285-6033231 FORWARD
LENGTH=2323
Length=2323
Score = 122 bits (66), Expect = 5e-27
Identities = 72/75 (96%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 211 GCTACCCCTAAGACAATCATGAAAGTCATGGGGATTCCAGGCCTTACCTTATACCATCTC 270
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1426 GCTACTCCTAAGACAATCATGAAAGTCATGGGCATTCCAGGCCTTACCTTATACCATCTC 1367
Query 271 AAAAGTCATCTTCAG 285
|| ||||||||||||
Sbjct 1366 AAGAGTCATCTTCAG 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5