BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903443

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05880.1 | Symbols: RCI2A | Low temperature and salt respons...   278    1e-74


> AT3G05880.1 | Symbols: RCI2A | Low temperature and salt responsive 
protein family | chr3:1755497-1756540 REVERSE LENGTH=495
Length=495

 Score =  278 bits (150),  Expect = 1e-74
 Identities = 160/165 (97%), Gaps = 0/165 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTACAGCTACTTGCGTTGATATTATTATCGCCATCCTCTTGCCTCCACTCGGTGTC  60
            ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  47   ATGAGTACAGCTACTTTCGTTGATATTATTATCGCCATCCTCTTGCCTCCACTCGGTGTC  106

Query  61   TTTCTCAGATTTGGTTGCGGGGTTGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  107  TTTCTCAGATTTGGTTGCGGGGTTGAGTTTTGGATATGTTTGGTTTTGACGCTACTTGGG  166

Query  121  TATATTCCTGGGATCTTATACGCCCTTTATGTCCTCACCAAATGA  165
            ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  167  TATATTCCTGGGATCATATACGCCATTTATGTCCTCACCAAATGA  211



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7142791842


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5