BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg903471 Length=459 Score E Sequences producing significant alignments: (Bits) Value AT3G06070.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 682 0.0 > AT3G06070.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1831057-1831923 REVERSE LENGTH=781 Length=781 Score = 682 bits (369), Expect = 0.0 Identities = 426/452 (94%), Gaps = 9/452 (2%) Strand=Plus/Plus Query 14 TGGAGCTTGAGCTTGATGATGATGTTTTCTTTGCGGACATAAGCAAGCAACTCAATCTCT 73 ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 85 TGGAGCTCGAGCTTGATGATGATGTCTTCTTTGCTGACATAAGCAAGCAACTCAATCTCT 144 Query 74 TAATCACAGATGAAGATGAGCAAAAATCTATTTCACTTTCCTCTTCTGTCTCTTTCCAGG 133 ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 145 TAATCACAGATGAAGATGAACAAAACCCTATTTCACTTTCCTCTTCTGTCTCTTTCCAGG 204 Query 134 GTTTGTTCAGAGGAAACTACCAAACATCAGCAACACCATATATGATGTACAATGAGCAGA 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 205 GTTTGTTCAGAGGAAACTACCAAACATCAGCAACACCATATATGATGTACAATGAGCAGA 264 Query 194 TCAATTACAACGTAA---GAGAGAGCAAAGGAACAGGAGTGTTCATCCCAAGATCTTCTC 250 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 265 TCAATTACAACGTAATTCGAGAGAGCAAAGGAACAGGAGTGTTTATCCCAAGATCTTCTC 324 Query 251 AGCCAAGAAGGAAACATAATCATCATCCTCATCAAAAGAAGCAAGGGAGATTC---GGTT 307 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 325 AGCCAAGAAGGAAACATAATCATCATCCTCATCAGAAGAAGCAAGGGAGATTCATCGGTT 384 Query 308 CCTTCATCCCCAAGCAACAGTTTCCTCATCATCATGTTCATGACAACAATCCCACAACTT 367 |||| ||||||||||||||||||||||||||| | ||||||||||||| |||||| Sbjct 385 CCTTTATCCCCAAGCAACAGTTTCCTCATCATG--GC-CATGACAACAATCTTACAACTC 441 Query 368 TCAACAACAACAACCAAGAAAGCATCACCTTTTATCATCCTTCTACTAACCCGAGAAGAA 427 |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| Sbjct 442 TCAACAACAACAACCAAGAAAGCATCACCTTTCATCATGCTTCTACTAACCCAAGAAGAA 501 Query 428 CCTACAGAGATGCAGCATCTCTTTTCACTTAG 459 |||||||||||||||||||||||||||||||| Sbjct 502 CCTACAGAGATGCAGCATCTCTTTTCACTTAG 533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21866470815 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5