BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903471

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06070.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   682    0.0  


> AT3G06070.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G19190.1); 
Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1831057-1831923 
REVERSE LENGTH=781
Length=781

 Score =  682 bits (369),  Expect = 0.0
 Identities = 426/452 (94%), Gaps = 9/452 (2%)
 Strand=Plus/Plus

Query  14   TGGAGCTTGAGCTTGATGATGATGTTTTCTTTGCGGACATAAGCAAGCAACTCAATCTCT  73
            ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  85   TGGAGCTCGAGCTTGATGATGATGTCTTCTTTGCTGACATAAGCAAGCAACTCAATCTCT  144

Query  74   TAATCACAGATGAAGATGAGCAAAAATCTATTTCACTTTCCTCTTCTGTCTCTTTCCAGG  133
            ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||
Sbjct  145  TAATCACAGATGAAGATGAACAAAACCCTATTTCACTTTCCTCTTCTGTCTCTTTCCAGG  204

Query  134  GTTTGTTCAGAGGAAACTACCAAACATCAGCAACACCATATATGATGTACAATGAGCAGA  193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  GTTTGTTCAGAGGAAACTACCAAACATCAGCAACACCATATATGATGTACAATGAGCAGA  264

Query  194  TCAATTACAACGTAA---GAGAGAGCAAAGGAACAGGAGTGTTCATCCCAAGATCTTCTC  250
            |||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||
Sbjct  265  TCAATTACAACGTAATTCGAGAGAGCAAAGGAACAGGAGTGTTTATCCCAAGATCTTCTC  324

Query  251  AGCCAAGAAGGAAACATAATCATCATCCTCATCAAAAGAAGCAAGGGAGATTC---GGTT  307
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||
Sbjct  325  AGCCAAGAAGGAAACATAATCATCATCCTCATCAGAAGAAGCAAGGGAGATTCATCGGTT  384

Query  308  CCTTCATCCCCAAGCAACAGTTTCCTCATCATCATGTTCATGACAACAATCCCACAACTT  367
            |||| |||||||||||||||||||||||||||   |  |||||||||||||  |||||| 
Sbjct  385  CCTTTATCCCCAAGCAACAGTTTCCTCATCATG--GC-CATGACAACAATCTTACAACTC  441

Query  368  TCAACAACAACAACCAAGAAAGCATCACCTTTTATCATCCTTCTACTAACCCGAGAAGAA  427
            |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct  442  TCAACAACAACAACCAAGAAAGCATCACCTTTCATCATGCTTCTACTAACCCAAGAAGAA  501

Query  428  CCTACAGAGATGCAGCATCTCTTTTCACTTAG  459
            ||||||||||||||||||||||||||||||||
Sbjct  502  CCTACAGAGATGCAGCATCTCTTTTCACTTAG  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5