BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903921
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10410.1 | Symbols: SCPL49, CPY | SERINE CARBOXYPEPTIDASE-LI... 2087 0.0
> AT3G10410.1 | Symbols: SCPL49, CPY | SERINE CARBOXYPEPTIDASE-LIKE
49 | chr3:3235291-3238113 REVERSE LENGTH=1828
Length=1828
Score = 2087 bits (1130), Expect = 0.0
Identities = 1186/1214 (98%), Gaps = 0/1214 (0%)
Strand=Plus/Plus
Query 419 GCATGTTCTACTTCTTCTTCGAGTCACGCAACAAGAAGGATGCTCCTGTTGTGATTTGGT 478
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 388 GCATGTTCTACTTCTTCTTCGAGTCACGGAACAAGAAGGATGCTCCTGTTGTGATTTGGT 447
Query 479 TGACGGGAGGGCCTGGATGCAGCAGTGAGTTGGCTATGTTCTATGAGAACGGTCCTTTCA 538
||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||
Sbjct 448 TGACGGGAGGGCCTGGATGTAGTAGTGAGTTGGCTGTGTTCTATGAGAATGGTCCTTTCA 507
Query 539 AGATCACTAGTAACATGTCTCTTGCTTGGAATGAGTATGGATGGGATCAGGTTTCCAATC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 AGATCACTAGTAACATGTCTCTTGCTTGGAATGAGTATGGATGGGATCAGGTTTCCAATC 567
Query 599 TTCTGTATGTTGATCAGCCTGTTGGAACTGGTTTCAGCTACACGACAGATAAAAGTGATA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TTCTGTATGTTGATCAGCCTGTTGGAACTGGTTTCAGCTACACGACAGATAAAAGTGATA 627
Query 659 TCCGTCATGACGAAACTGGAGTTAGCAATGATCTTTATGATTTTCTGCAGGCTTTCTTTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TCCGTCATGACGAAACTGGAGTTAGCAATGATCTTTATGATTTTCTGCAGGCTTTCTTTG 687
Query 719 CAGAGCACCCTAAGTTGGCCAAAAACGACTTTTACATTACTGGAGAGTCATATGCTGGGC 778
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 688 CGGAGCACCCTAAGTTGGCAAAAAACGACTTTTATATTACTGGAGAGTCATATGCTGGGC 747
Query 779 ACTATATTCCGGCTCTTGCTTCCCGAGTCCATAAAGGAAACAAGGCTAATGAGGGAGTTC 838
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 ACTATATCCCAGCTTTTGCTTCCCGAGTCCATAAAGGAAACAAGGCTAATGAGGGAGTTC 807
Query 839 ATATTAACCTAAAGGGATTCGCCATTGGAAATGGGCTTACAGATCCTGCACTCCAATACC 898
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 808 ATATTAACCTAAAGGGATTCGCTATTGGAAATGGGCTTACAGATCCTGCACTCCAATACC 867
Query 899 CAGCCTATCCTGACTACGCTTTGGAAATGGGTTTAATCACGCAAAAAGAGCATGATCGTT 958
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 868 CAGCCTATCCTGACTACGCTTTGGAAATGGGTCTAATCACGCAAAAAGAGCATGATCGCT 927
Query 959 TAGAAAAGATTGTCCCACTGTGCGAACTATCAATTAAGCTTTGTGGAACTGATGGCACAA 1018
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 928 TAGAAAAGATTGTCCCACTGTGCGAACTATCAATCAAGCTTTGTGGAACTGATGGCACAA 987
Query 1019 CTTCTTGTTTGGCATCATATCTTGTTTGCAACTCCTTGTTCAGTGGTGTAATGAGTCATG 1078
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 988 CTTCTTGTTTGGCATCATATCTTGTCTGCAACTCTTTGTTCAGTGGTGTAATGAGTCATG 1047
Query 1079 CTGGTGGAGTAAACTATTACGACATCAGGAAGAAGTGCGTGGGAAGTTTGTGCTACGATT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CTGGTGGAGTAAACTATTACGACATCAGGAAGAAGTGCGTGGGAAGTTTGTGCTACGATT 1107
Query 1139 TCTCAAACATGGAGAAATTTTTGAATCTGCAATCTGTGAGGAAGTCGCTTGGTGTTGGGG 1198
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1108 TCTCAAACATGGAGAAATTTTTGAATCTGCAATCTGTGAGGAAGTCACTTGGTGTTGGGG 1167
Query 1199 ACATAGACTTTGTCTCCTGCAGTACTTCAGTCTATCAGGCAATGCTTGTAGATTGGATGA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 ACATAGACTTTGTCTCCTGCAGTACTTCAGTCTATCAGGCAATGCTTGTAGATTGGATGA 1227
Query 1259 GGAATCTCGAGGTTGGAATTCCCACACTCTTGGAAGATGGAATCAGCCTCCTTGTGTATG 1318
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1228 GGAATCTCGAGGTTGGAATTCCCACGCTCTTGGAAGATGGAATCAGCCTCCTTGTGTATG 1287
Query 1319 CTGGAGAATATGATCTTATCTGCAACTGGCTCGGTAACTCGAGGTGGGTGAATGCAATGG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 CTGGAGAATATGATCTTATCTGCAACTGGCTCGGTAACTCGAGGTGGGTGAATGCAATGG 1347
Query 1379 AGTGGTCAGGGAAAACGAACTTTGGGGCGGCTGAAGAAGTTCCGTTTATTGTGGATGGCA 1438
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1348 AGTGGTCAGGGAAAACAAACTTTGGGGCGGCTAAAGAAGTTCCGTTTATTGTGGATGGCA 1407
Query 1439 AAGAAGCAGGCTTGTTGAAGACTTATGAACAACTCAGTTTCCTCAAGGTGCGAGATGCAG 1498
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1408 AAGAAGCAGGCTTGTTAAAGACTTATGAACAACTCAGTTTCCTCAAGGTGAGAGATGCAG 1467
Query 1499 GACACATGGTTCCAATGGACCAGCCAAAAGCTGCATTGAAAATGCTGAAGCGATGGATGG 1558
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1468 GACACATGGTTCCAATGGACCAGCCTAAAGCTGCATTGAAAATGCTGAAGCGATGGATGG 1527
Query 1559 AGAATTCGCTTATCGAAGATGCTACTGTTACTGTGGCTGCTCAAGGAGGAGAGGAACTGG 1618
||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1528 AGAATTCACTTATCGAAGATGCTACTGTGACTGTTGCTGCTCAGGGAGGAGAGGAACTGG 1587
Query 1619 TTGCTCAGATGTGA 1632
||||||||||||||
Sbjct 1588 TTGCTCAGATGTGA 1601
Score = 510 bits (276), Expect = 1e-143
Identities = 320/341 (94%), Gaps = 3/341 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAACTAACTTTTCTCAGCCTTCTTTTGCATTTCGTCGTCTTCATCGCTTCAACG 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 51 ATGGAGAAACTAACTTTTCTCAGCCTTCTCCTGCATTTCGTCGTCTTCATCGCTTCAACG 110
Query 61 TTTCCGTCTTCATCGTTTCTCTTGAACGATCGCACCTTCGAGCGATCAAACTTGCCGTCG 120
| |||||||||||||| |||||||| ||||||||||| ||| |||| |||||||||||
Sbjct 111 ATACCGTCTTCATCGTTCCTCTTGAATGATCGCACCTTTGAGAGATCGAACTTGCCGTCT 170
Query 121 ACGCGCGCGGAGAAGCTGATCCGGGAGCTAAACCTTTTCCCGCAGCAGGATCTGAATGTG 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 171 ACGCGCGCGGAGAAGCTGATCCGTGAGCTAAACCTTTTCCCGCAGCAGGATCTGAATGTG 230
Query 181 ATCGATGTCGCTGATTTGCCTCTCACTGCCGCGGAGAGATCGGGGATTGTTGAACGGAAG 240
||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 231 ATCGATGTCGCTGATTTGCCTCTCACTGCTGCGGAGGGACCGGGGATTGTTGAACGGAAG 290
Query 241 TTCGTATTCCCGAATATACTTGCCGATAATGGTGGCGCAACTGTCGAAGATTTAGGTCAT 300
||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||||
Sbjct 291 TTCGTATTCCCGAATATACTTGCCGAT---GGTGGCCCTACTGTCGACGATTTAGGTCAT 347
Query 301 CATGCTGGTTATTACAAGCTCCCAAAATCTCGTGGCGCAAG 341
||||||||||||||||||||||| |||||||||||||||||
Sbjct 348 CATGCTGGTTATTACAAGCTCCCGAAATCTCGTGGCGCAAG 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5