BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904048
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11660.1 | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3678835-3... 850 0.0
AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 324 7e-88
AT2G35960.1 | Symbols: NHL12 | NDR1/HIN1-like 12 | chr2:1510694... 278 6e-74
AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 231 4e-60
> AT3G11660.1 | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3678835-3679943
REVERSE LENGTH=1109
Length=1109
Score = 850 bits (460), Expect = 0.0
Identities = 531/566 (94%), Gaps = 2/566 (0%)
Strand=Plus/Plus
Query 45 AATCTTCTTCATCTTCATCATCTTCCTAACAATCCTCCTCATTTGGGCAATTCTCCAACC 104
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AATCTTCGTCCTCTTCATCATCTTCCTAACAATCCTCCTCATTTGGGCAATTCTCCAACC 408
Query 105 TTCAAAGCCACGTTTCCTCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAA 164
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ATCAAAGCCACGCTTCATCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAA 468
Query 165 TCCACCGAACCTCATCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACCCTAACGA 224
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 469 TCCACCGAACCTCCTCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACCCTAACAA 528
Query 225 CAAGATCGGCGTTTACTACGACCGCCTTGACGTCTACGCTACTTACCGGAGCCAACAGAT 284
||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 529 CAAAATCGGCATTTACTACGACCGGCTTGACGTCTACGCTACTTACCGGAGCCAACAAAT 588
Query 285 CACTTTCCGAACATCAATCCCTCCCACGTATCAGGGACACAAAGAAGTCAACATCTGGTC 344
|||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 589 CACTTTCCCAACATCAATCCCTCCCACGTATCAGGGACACAAAGATGTCGACATCTGGTC 648
Query 345 GCCGTTTGTCTACGGAACCTCCGTTCCCATCGCTCCTTTTAACGGCGTTGGTCTCGACGA 404
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 649 GCCGTTTGTTTACGGAACCTCCGTTCCCATCGCTCCTTTTAACGGCGTTAGTCTTGAC-A 707
Query 405 C-GATAAAGATAACGGCGCCATTATGTTGATCATTCGTGCTGATGGTAGAGTTCGGTGGA 463
| |||||||||||||| | | || |||||||||||||||||||||||||||| ||||||
Sbjct 708 CCGATAAAGATAACGGTGTCGTTTTGTTGATCATTCGTGCTGATGGTAGAGTGAGGTGGA 767
Query 464 AGGTTGGGACTTTTATCACCGGGAAGTATCATCTTTATGTGAAGTGCCCGGCGTATATTA 523
||||||||||||||||||||||||||||||||||| |||||||||| || || ||||| |
Sbjct 768 AGGTTGGGACTTTTATCACCGGGAAGTATCATCTTCATGTGAAGTGTCCAGCATATATAA 827
Query 524 ACTTCGGTAATAAAGCTACCGGAGTTATCATCGGAGATAACGCCGTTAAGTATACGTTTA 583
|||||||||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 828 ACTTCGGTAACAAAGCTAACGGAGTTATCGTCGGAGACAACGCCGTTAAGTATACGTTTA 887
Query 584 CCAGTAGTTGTAGTGTTAGTGTGTGA 609
||| ||||||||||||||||||||||
Sbjct 888 CCACTAGTTGTAGTGTTAGTGTGTGA 913
> AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr5:1934739-1935644
REVERSE LENGTH=906
Length=906
Score = 324 bits (175), Expect = 7e-88
Identities = 397/500 (79%), Gaps = 32/500 (6%)
Strand=Plus/Plus
Query 75 AATCCTCCTCA-TTTGGGCAATTCTCCAACCTTC-AAAGCCACGTTTCCTCCTCCAAGAC 132
||| ||||| | |||||||||| || ||||| || ||| ||||| ||| |||||||||||
Sbjct 162 AATTCTCCT-AGTTTGGGCAATCCTTCAACCATCGAAA-CCACGCTTCGTCCTCCAAGAC 219
Query 133 GCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCATCACCTCCAACTTC 192
|||||||||| | ||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 220 GCCACCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTC 279
Query 193 CAAATCACTCTCTCTTCCCGGAACCCTAACGACAAGATCGGCGTTTACTACGACCGCCTT 252
||| |||||||||| || || |||||||||||||||||||| | ||||||||||| |||
Sbjct 280 CAATTCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGTATCTACTACGACCGTCTT 339
Query 253 GACGTCTACGCTACTTACCGGAGCCAACAGATCACTTT-CCGAA-CATCAATCCCTCCCA 310
|||||||||||| ||||||||||||||||||||||||| |||| | || | | | |||
Sbjct 340 GACGTCTACGCTTCTTACCGGAGCCAACAGATCACTTTGCCGAGTCC-CA-TGCTTACCA 397
Query 311 CGTATCAGGGACACAAAGAAGTCAACATCTGGTCGCCGTTT-GTCTACGGA-ACCTCCGT 368
| ||||| |||||||||||||||||| | ||||| || ||| ||| ||| || |||||
Sbjct 398 CTTATCAAGGACACAAAGAAGTCAACGTTTGGTCTCC-TTTCGTCGGTGGATAC-TCCGT 455
Query 369 TCCCATCGCTCCTTTTAACGGCGTTGG-TCTCGA-C-G-ACGATA-AAGATAACGGCGCC 423
||| | ||||| | |||| | || |||||| | | || || ||| | |||||
Sbjct 456 TCCTGTGGCTCCGTACAACG-CTTTCTATCTCGATCAGGACCATTCAAG-T---GGCGCG 510
Query 424 ATTATGTTGAT-CATTCGTGCT-GATGGTAGAGTTCGGTGGAAGGTTGGGA-CTTTTATC 480
|| |||||||| | ||| | || || ||| ||||||| ||||| || || | | || |||
Sbjct 511 ATCATGTTGATGC-TTCAT-CTCGACGGTCGAGTTCGTTGGAAAGTCGG-ATCCTTCATC 567
Query 481 ACCGGGAAGTATCATCTTTATGTGA-AGTGCCCGGCG-TATATTAACTTCGGTAATAAAG 538
||||| || |||||||| | || | | || | ||| | ||| |||||||| | || |
Sbjct 568 ACCGGAAAATATCATCTCCACGTTAGA-TGTCATGCGCT-TATCAACTTCGGGAGTAGTG 625
Query 539 CTACCGGAGTTATCATCGGA 558
|| ||||||||||| |||||
Sbjct 626 CTGCCGGAGTTATCGTCGGA 645
> AT2G35960.1 | Symbols: NHL12 | NDR1/HIN1-like 12 | chr2:15106940-15107993
FORWARD LENGTH=1054
Length=1054
Score = 278 bits (150), Expect = 6e-74
Identities = 415/539 (77%), Gaps = 34/539 (6%)
Strand=Plus/Plus
Query 51 CTTCATCTTCATCATCTTCCTAACAATCCTCCTCATTTGGGCAATTCTCCAACCTTCAAA 110
||||||| ||||| |||| ||||||| ||||| ||||| ||| |||||||| ||||
Sbjct 291 CTTCATCATCATCGTCTTGATAACAATATTCCTCGTTTGGATAATCCTCCAACCGACAAA 350
Query 111 GCCACGTTTCCTCCTCCAAGACGCCACCGTCTACGCCTTCAA-CGTCTCCGGCAATCCAC 169
||| | ||| |||||||||||||||||||||||||||| || | |||| | || ||
Sbjct 351 ACCAAGATTCATCCTCCAAGACGCCACCGTCTACGCCTTTAATC-TCTC-G-CAG-CCT- 405
Query 170 CGAACCTCATCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACCCTAACGACAAGA 229
|||||| ||||||| ||||| || ||||| || |||| || |||| ||| |||||
Sbjct 406 --AACCTCCTCACCTCAAACTTTCAGATCACGATCGCTTCACGTAACCGAAACT-CAAGA 462
Query 230 -TCGGCGTTTACTACGACCGCCTTGACGTCTACGCTACTTACCGGAGCCAACAGATCACT 288
|||| | ||||||||||| ||| ||||||||||||||||||||| |||||| ||||||
Sbjct 463 ATCGGAATCTACTACGACCGTCTTCACGTCTACGCTACTTACCGGAACCAACAAATCACT 522
Query 289 TTCCGAACATCAATCCCTCCCACGTATCAGGGACACAAAGAAGTCAACATCTGGTCGCCG 348
| || ||| |||| ||||| ||||| || || || ||||||| |||| | ||||| ||
Sbjct 523 CTACGTACAGCAATTCCTCCGACGTACCAAGGCCATAAAGAAGACAACGTTTGGTCTCC- 581
Query 349 TTT-GTCTACGGAACCTCCGTTCCC-ATCGCTCCTTTTAACGGCGTTGG-TCTCGACGAC 405
||| || || |||| |||||| ||| ||||||||||| |||| ||| || ||||| ||||
Sbjct 582 TTTCGTTTATGGAAACTCCGT-CCCTATCGCTCCTTTCAACGCCGT-GGCTCTCGGCGAC 639
Query 406 GATAAAGATAACG-GCGCCAT-T-ATGTTGATCATTCGTGCTGATGGTA-GAGTTCGGTG 461
|| | || | || | | | | | |||||| || || || ||||| | | || ||||
Sbjct 640 GAGCA-GA-ATCGTGGGTT-TGTCACGTTGATTATACGCGCCGATGG-ACGCGTGAGGTG 695
Query 462 GAAGGTTGGGACTTTTATCACCGGGAAGTATCATCTTTATGTGAAGT-GCCCGGCGTAT- 519
|||||| |||||| |||| || |||||||||||||| |||| || | | ||||| |
Sbjct 696 GAAGGTCGGGACTCTTATTACAGGGAAGTATCATCTCCATGTTC-GTTGTCAGGCGT-TC 753
Query 520 ATTAA-CTTCGG-TAATAAAGCTACCGGAGTT-ATCATCGGAGATAACGCCGTTAAGTA 575
|| || || || | ||||||| |||||||| || |||| || |||||||| |||||
Sbjct 754 ATAAATCT--GGCTGATAAAGCCGCCGGAGTTCATG-TCGGCGAAAACGCCGTCAAGTA 809
> AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:19450649-19451982
FORWARD LENGTH=970
Length=970
Score = 231 bits (125), Expect = 4e-60
Identities = 368/483 (76%), Gaps = 25/483 (5%)
Strand=Plus/Plus
Query 108 AAAGCCACGTTTCCTCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCC 167
||| ||| | ||| |||||||||||||||||||||||||||||||| |||| | ||| ||
Sbjct 234 AAA-CCAAGATTCGTCCTCCAAGACGCCACCGTCTACGCCTTCAACCTCTC-G-CAA-CC 289
Query 168 ACCGAACCTCATCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACCCTAACGACAA 227
| |||||| | || || ||||||||| |||| || | || || ||||||||| |||
Sbjct 290 A---AACCTCCTTACTTCAAACTTCCAAGTCACAATCGCATCTCGTAACCCTAACTCCAA 346
Query 228 GATCGGCGTTTACTACGACCGCCTTGACGTCTACGCTACTTACCGGAGCCAACAGATCAC 287
|||||| | ||||||||||| || ||||||||||||| ||| || ||| ||||||||
Sbjct 347 GATCGGAATCTACTACGACCGTCTCCACGTCTACGCTACATACATGAACCAGCAGATCAC 406
Query 288 TTTCCGAACATCAATCCCTCCCACGTATCAGGGACACAAAGAAGTCAACATCTGGTCGCC 347
| | || || | || ||||| |||||||| || ||||||||||||||| | ||||| ||
Sbjct 407 TCTACGTACGGCGATTCCTCCGACGTATCAAGGCCACAAAGAAGTCAACGTTTGGTCTCC 466
Query 348 GTTT-GTCTACGGAACCTCCG-TTCCCATCGCTCCTTTTAACGGCGTTGGTCTCG-ACGA 404
||| |||||||| || | || |||||||||| |||| ||| ||| | | | | | ||
Sbjct 467 -TTTCGTCTACGGGAC-TGCGGTTCCCATCGCACCTTACAACTCCGTCGCTTTGGGA-GA 523
Query 405 CGATAAAGATAACG-GCGCCAT-TATG-TTGATCATTCGTGCTGATGGTAGAGTTCGGTG 461
|| |||||| || | | | || | ||||| || || || ||||| | || ||||
Sbjct 524 GGAGAAAGAT--CGTG-GATTTGTAGGGTTGATGATACGCGCCGATGGGACCGTGAGGTG 580
Query 462 GAAGGTTG-GGACTTTTATCACCGGGAAGTATCATCTTTATGTGAAGTGCCCGGCGTAT- 519
||| || | ||||||| |||||||| || |||||| | |||| ||| | ||||| |
Sbjct 581 GAAAGT-GAGGACTTTGATCACCGGAAAATATCATATCCATGTTCGGTGTCAGGCGT-TC 638
Query 520 ATTAA-CTTCGGTAATAAAGCTACCGGAGTTATCATCGGAGATAACGCCGTTAAGTATAC 578
|| || ||| || || |||||| | || ||| | |||| ||||||||||||||||| ||
Sbjct 639 ATCAATCTT-GGAAACAAAGCTGCTGGTGTTCTTGTCGGTGATAACGCCGTTAAGTACAC 697
Query 579 GTT 581
|||
Sbjct 698 GTT 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5