BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904144
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49440.1 | Symbols: | unknown protein; Has 30201 Blast hits... 610 4e-174
> AT5G49440.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20048239-20049597
FORWARD LENGTH=1359
Length=1359
Score = 610 bits (330), Expect = 4e-174
Identities = 447/503 (89%), Gaps = 9/503 (2%)
Strand=Plus/Plus
Query 1 CCACCACGAACAAACCACAAGAGCCAAAACGACTCCGTGAATTGCCTCCACAAGAGAAGT 60
||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 763 CCACCACGAACAATCCACAAGAGCC-AAACGACTCCTTGGATTGCCTCCACAAGAGAAGC 821
Query 61 CCGTCGGATCAATCACACCATCACCGGAGCTGGAGAAAACTA-AGGCGGAGAGACCCGAG 119
||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||
Sbjct 822 CCGTCGGATCAATCACACCATCACCAGAGCTGGAGAAAA-AACAGGTAGAGAGACCCGAG 880
Query 120 AAGAGAAGATCCGTCACACCGAGAACTCGCCGAAGTGCCCAAACCACAAGAGGAACGACG 179
||||||||||| | |||||||| ||||| ||| ||||||||| || |||| ||||||||
Sbjct 881 AAGAGAAGATCTGCCACACCGAAAACTCACCGTTGTGCCCAAATCA-AAGAAGAACGACG 939
Query 180 ACGTCTGAAGAAACACGGTGATGCACCACCAATTTCTCAGATCTGGAGGATGGTCCCGCC 239
| ||||||||||||| || |||||||||||||||| ||||||||||| |||||||||| |
Sbjct 940 ATGTCTGAAGAAACATGGCGATGCACCACCAATTTATCAGATCTGGAAGATGGTCCCGTC 999
Query 240 GTTAGGAGCCGCACCGCTGCTACAATCGCCGCATCAAAGCCACAACCTAAAACAGAGAGA 299
| |||||||||||| | |||||| ||| | |||||||||||| ||| |||| ||||||
Sbjct 1000 GATAGGAGCCGCACAACCGCTACAGTCGTCTCATCAAAGCCACTGCCTTAAACGGAGAGA 1059
Query 300 GACACGCCGCACGTCCTTTGCTCCGTGCGTGGCCACTCGCCGCTTTACCACCAACAAGAG 359
||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 1060 GACACGCCGCACGTCCTTTGCTCCGTGCGTGACCACTCGCCGCAT-ACCACCAACAAGAG 1118
Query 360 ACGAAGAGCAAGCT-GAATTTGGACACCACCGAAACTTCAAAGGGGAGGCGGAGGAGATA 418
||||||||||||| || |||| ||||||||| | ||||||||| ||||| |||||||||
Sbjct 1119 ACGAAGAGCAAGCCAGA-TTTGAACACCACCGGAGCTTCAAAGGAGAGGCAGAGGAGATA 1177
Query 419 ACAGAGAGGAAGGG-GAAAGAGAGAGAAGCCCTCTCCGGCCACCGGTGAGGAGCACCGTG 477
| ||||||||| || ||| ||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1178 AGAGAGAGGAAAGGAGAA-GAGGGAGAAGCCCTCTCCGGCCACCGGTGAGAAGCACCGTG 1236
Query 478 ACCGGAGAGGCAGAGATCGAGAT 500
|||||||||||| ||||| ||||
Sbjct 1237 ACCGGAGAGGCACAGATCTAGAT 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24062156413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5