BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904559 Length=591 Score E Sequences producing significant alignments: (Bits) Value AT3G16190.1 | Symbols: | Isochorismatase family protein | chr3... 815 0.0 > AT3G16190.1 | Symbols: | Isochorismatase family protein | chr3:5489701-5491248 REVERSE LENGTH=826 Length=826 Score = 815 bits (441), Expect = 0.0 Identities = 543/593 (92%), Gaps = 4/593 (1%) Strand=Plus/Plus Query 1 ATGGCGGAGAGATGGAGGAACACGGCTCTACTCGTTATCGATATGCAGAAGGATTTCATA 60 ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct 54 ATGGCCGAGAGATGGAGGAACACGGCTCTACTCGTCATCGACATGCAGAACGATTTCATA 113 Query 61 GAGGAAAGTTCAATGATTCGAGTGAAAGGAGGAAAATCTATAGTTCCTAATGTTATTAGA 120 |||||| || | ||| | |||||||||||||||||||||||||||||||||||| ||| Sbjct 114 GAGGAAGGTGCTGTGACGCAAGTGAAAGGAGGAAAATCTATAGTTCCTAATGTTATCAGA 173 Query 121 GTCGTTGAACTCGCGAGGCAGCATGGTATTCTCGTAATTTGGGTTGTTAGGGAACATGAT 180 ||||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||| Sbjct 174 GTCGTCGAACTCGCGAGGCAGCGTGGTATTCTCGTAATTTGGGTTGTTCGAGAACATGAT 233 Query 181 CCTCGAGGAAGAGATGTTGAGA-TATTCAGGCGTCATCACTACAATTCTGATCAAGTCGG 239 | || ||||||||||||||| | |||||||||| ||| |||||| |||||| ||||||| Sbjct 234 CGTCAAGGAAGAGATGTTGA-ATTATTCAGGCGCCATAACTACAGTTCTGAGAAAGTCGG 292 Query 240 ACCAACTGTTAAAGGCACTGTAGGAGCAGAATTAGTTGATGGATTGATCATCAAGGAAGA 299 ||| | |||||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct 293 GCCAGTTATTAAAGGCACCGTAGGAGCAGAATTGGTTGATGGATTGATGATCAACGAAGA 352 Query 300 AGAAGACTATAAGATTGTGAAAACTCGTTTTAGCGCCTTT-TTTAGTACCAATCTTCATT 358 ||| |||||||||||||||||||||||||| || | |||| ||||||||||||||||||| Sbjct 353 AGATGACTATAAGATTGTGAAAACTCGTTTCAGTG-CTTTCTTTAGTACCAATCTTCATT 411 Query 359 CCTTCTTGCAAACTTCTGGGGTTACCAATTTAGTCATTGCTGGTGTTCAAACGCCGAATT 418 |||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| | Sbjct 412 CCTTCTTGCAAACTTCAGGGGTTACCAAGTTAGTGATTGCTGGTGTGCAAACGCCGAACT 471 Query 419 GTATCCGGCAAACGGTTTTTGATGCAGTGGAGCTGGATTATCCAAATGTGACAGTTATTA 478 |||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||||| Sbjct 472 GTATCCGGCAAACGGTGTTTGATGCAGTGGCGCTGGATTATCCCAATGTGACTGTTATTA 531 Query 479 CAGATGCCACAGCTGCTGCAACACCAGAGATCCATACTGCGAATATTCTTGACATGAAGA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 CAGATGCCACAGCTGCTGCAACACCAGAGATCCATACTGCGAATATTCTTGACATGAAGA 591 Query 539 ATATAGGAGTCAAGACTCCTACATTACATGAGTGGTCCGAAGAATTTGCTTGA 591 |||| ||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 592 ATATTGGAGTCAAGACTCCTACATTACACGAGTGGTCCGAAGAACTTGCTTGA 644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28432527202 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5