BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904732

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17675.1 | Symbols:  | Cupredoxin superfamily protein | chr3...   621    1e-177


> AT3G17675.1 | Symbols:  | Cupredoxin superfamily protein | chr3:6042244-6042850 
REVERSE LENGTH=390
Length=390

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 372/390 (95%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  1    ATGCTTAATCAGGGAAACCAATTCTCTAGCTTGATTATACTCTATGCCATTTTCTCTCTA  60
            |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct  1    ATGCTTCATCAGGGAAGCCGATTCTCTAGCTTGATTATACTCTATGCCATTTTCTCTTTA  60

Query  61   TCTTCTCTCATGCTAAAATCTGAAGGAACAGAGCATATAGTTGGTGACAGCAGTGGCTGG  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  61   TCTTCTCTCATGCTAAAATCTGAAGGAACAGAGCATATAGTTGGTGACAGCAATGGCTGG  120

Query  121  GAACTCTTTACAAACTATACCAACTGGACACAGGGAAGAGAGTTTCATGTCGGTGATGTC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  GAACTCTTTACAAACTATACCAACTGGACACAGGGAAGAGAGTTTCATGTCGGCGATGTC  180

Query  181  TTAGTATTCAACTACAAAAGTGACCAGCATAATGTTATGCAAGTTAACTCTACAGCATAC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTAGTATTCAACTACAAAAGTGACCAGCATAATGTTATGCAAGTTAACTCTACAGCATAC  240

Query  241  ACAGATTGTGGAATAGACAACTACACATCTCTCTTCACCAAAGGCAATGACTCAATAATC  300
            |||||||||||| ||||||| |||||| |||||||||||||||| || ||||||||||||
Sbjct  241  ACAGATTGTGGATTAGACAATTACACAACTCTCTTCACCAAAGGTAACGACTCAATAATC  300

Query  301  ATATCAGAAGTTGGAGAGTTATGGTTCATCTGCGCAGTGGGTGATCACTGTGAAAATGGC  360
             |||||||||||||| || ||||||||||||| | ||||| ||||||||||| |||||||
Sbjct  301  CTATCAGAAGTTGGAAAGCTATGGTTCATCTGTGGAGTGGATGATCACTGTGTAAATGGC  360

Query  361  CAGAAGCTAAGCATTAATGTAGCTCCTTGA  390
            ||||||||||||||||||||||||||||||
Sbjct  361  CAGAAGCTAAGCATTAATGTAGCTCCTTGA  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5