BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904747
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17800.2 | Symbols: | Protein of unknown function (DUF760) ... 1991 0.0
AT1G48450.1 | Symbols: | Protein of unknown function (DUF760) ... 640 0.0
> AT3G17800.2 | Symbols: | Protein of unknown function (DUF760)
| chr3:6091110-6093151 REVERSE LENGTH=1700
Length=1700
Score = 1991 bits (1078), Expect = 0.0
Identities = 1218/1286 (95%), Gaps = 7/1286 (1%)
Strand=Plus/Plus
Query 1 ATGGATGCCGTGACGGCGAGTTTGGTTCGATCTCCCGTCTTACCACCTAGAACTTCCGAC 60
||||||||| |||| |||||||||||||||||||| || ||||| | ||||||||||||
Sbjct 279 ATGGATGCCTTGACCTCGAGTTTGGTTCGATCTCCCATCGTACCATCGAGAACTTCCGAC 338
Query 61 AACGGTTCTGGATCTATGTTCCTTACCGCCAGTGGCCCTGGATTCACTCGTTCTGGTTCT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 339 AACGGTTCTGGATCTATGTTCCTTACCGCCAGTGGCCCTGGATTCACGCGTTCTGGTTCT 398
Query 121 TCAAGACTTCAACTTCGTTTAAGGGTATGTCCCAAATCTCTTCAAAACGCGTCTGCTAGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TCAAGACTTCAACTTCGTTTAAGGGTATGTCCCAAATCTCTTCAAAACGCGTCTGCTAGA 458
Query 181 TCCTCAAGATCATTGCAAAGCTTAACAACGACTGCTAAAACTCGGACAAGTTTTGTGGTT 240
|||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 459 TCCTCAAGATCATTACAGAGCTTAACAACGACTGCTAAAACTCGGAGAAGTTTTGTGGTT 518
Query 241 AGAGCTTCTTCAGCGTCTAATGATGCTTCCTCTGGTTCTTCCCCCAAACCGATCGCTCCG 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 519 AGAGCTTCTTCAGCGTCTAATGATGCTTCATCTGGTTCTTCCCCCAAACCGATCGCTCCG 578
Query 301 CTTCAGCTTCAATCGCCTGCTGGTCAGTTTCTGTCTCAGATTTTGGTGAGCCATCCTCAT 360
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CTCCAGCTGCAATCGCCTGCTGGTCAGTTTCTGTCTCAGATTTTGGTGAGCCATCCTCAT 638
Query 361 CTTGTGCCTGCAGCTGTTGAACAGCAGCTTGACCAGCTTCAAACTGATCGGGACTCTGAT 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 639 CTTGTGCCTGCAGCTGTTGAACAGCAGCTTGAGCAGCTTCAAACTGATCGGGACTCTCAG 698
Query 421 GGACAGAACAAGGATGCATCGTCTGTACCTGGAACCGACATCGTTCTCTACAAGAGAATT 480
||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 699 GGACAGAACAAAGATTCAGCGTCTGTACCTGGAACCGACATCGTTCTCTACAGGAGAATT 758
Query 481 GCGGAGGTT-AAGGAAAACGAGAGAAGAAGGACATTGGAGGAGATTTTGTATGCATTGGT 539
|||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 759 GCGGAG-TTGAAGGAAAACGAGAGAAGAAGAACATTGGAAGAGATTTTGTATGCATTGGT 817
Query 540 GGTTCAAAAGTTCATGGAATCTAATGTATCACTTGTACCATCAGTAAGCCCATCTTCAGA 599
||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct 818 GGTTCAAAAGTTCATGGAAGCTAACGTATCACTTGTACCTTCAGTAAGCCCATCTTCAGA 877
Query 600 TCCGTCTGGTCGGGTTGATACTTGGCCGACCAAAGTGGAGAAACTTGAGCGGCTTCACTC 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 878 TCCGTCTGGTCGGGTTGATACTTGGCCGACCAAAGTGGAGAAACTCGAGCGGCTTCACTC 937
Query 660 GCCCGAGATGTACGAGATGATTCACAACCATCTAGCCCTCATTCTTGGAAGCAGAATGGG 719
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 938 GCCCGAGATGTACGAGATGATTCACAACCATCTTGCCTTGATTCTTGGAAGCAGAATGGG 997
Query 720 TGATCTGAACTCTGTTGCTCAGATAAGCAAGCTCAGAGTTGGGCAAGTTTACGCTGCTTC 779
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 998 TGATCTGAACTCTGTTGCACAGATAAGCAAGCTCAGAGTTGGCCAAGTTTACGCTGCTTC 1057
Query 780 TGTTATGTATGGATATTTCTTGAAGAGGGTGGACCAAAGGTTTCAGCTTGAGAAGACGAT 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TGTGATGTATGGATATTTCTTGAAGAGGGTGGACCAAAGGTTTCAGCTTGAGAAGACGAT 1117
Query 840 GAAGATTCTTCCTGGTGGGTTGGATGAAAGTAAAACAAGCGTTGAACAA-CCAGAGGAGA 898
|||||||||||| ||||||| |||||||||||||||||||||||| ||| || |||| ||
Sbjct 1118 GAAGATTCTTCCGGGTGGGTCGGATGAAAGTAAAACAAGCGTTGAGCAAGCC-GAGGGGA 1176
Query 899 AAACGACATATCAGGCGG-T--ATCCTCTCACCCAGAGGTTGGTTCATTTGCAGGCGGAG 955
| ||||||||||||| | ||| |||||||||||||||||| ||||||| |||||||
Sbjct 1177 CGGCAACATATCAGGCGGCTGTATCGTCTCACCCAGAGGTTGGTGCATTTGCGGGCGGAG 1236
Query 956 TTAGTGCTAAGGGCTTTGGCAGTGAGATTAAACCGTCCCGGTTAAGGTCATACGTGATGT 1015
|||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||
Sbjct 1237 TTAGTGCTAAGGGCTTCGGCAGCGAGATTAAACCATCCCGATTAAGGTCATATGTGATGT 1296
Query 1016 CATTCGATGCGGAGACGCTTCAGAGATACGCCACTATAAGATCAAGAGAAGCTGTTGGAA 1075
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1297 CATTTGATGCGGAGACGCTGCAGAGATACGCCACTATAAGATCAAGAGAAGCAGTTGGAA 1356
Query 1076 TCATCGAGAAGCACACAGAGGCATTGTTTGGTAAGCCCGAGATTGTAATAACACCAGAAG 1135
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1357 TCATCGAGAAGCACACAGAGGCATTGTTTGGTAAGCCTGAGATTGTAATAACACCGGAGG 1416
Query 1136 GAACGGTTGATTCATCGAAGGACGAACAGATAAAGATCAGCTTCGGTGGAATGAAGAGGC 1195
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GCACAGTCGATTCATCGAAGGACGAACAGATAAAGATCAGCTTCGGTGGAATGAAGAGGC 1476
Query 1196 TCGTCTTGGAGGCTGTAACTTTCGGGTCGTTCCTTTGGGATGTTGAGAGCCATGTAGATG 1255
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TCGTCTTGGAGGCAGTTACTTTCGGGTCGTTCCTTTGGGATGTTGAGAGCCATGTAGATG 1536
Query 1256 CTAGGTACCACTTTGTATTGAACTAA 1281
| ||||||||||||||||||||||||
Sbjct 1537 CGAGGTACCACTTTGTATTGAACTAA 1562
> AT1G48450.1 | Symbols: | Protein of unknown function (DUF760)
| chr1:17908503-17910450 REVERSE LENGTH=1620
Length=1620
Score = 640 bits (346), Expect = 0.0
Identities = 823/1043 (79%), Gaps = 74/1043 (7%)
Strand=Plus/Plus
Query 292 ATCGCTCCGCTTCAGCTTCAA-TCGCCTGCT-GGTCAGTTTCTGTCTCAGATTTTGGTGA 349
||||| ||||||||| || || || |||| | || ||||||||||| ||||| || ||||
Sbjct 352 ATCGCGCCGCTTCAG-TTGAAGTCTCCTG-TGGGACAGTTTCTGTCACAGATATTAGTGA 409
Query 350 GCCATCCTCATCTTGTGCCTGCAGCTGTTGAACAGCAGCTTGACCAGCTTCAAACTGATC 409
|||||||||||||||| || ||||||||||||||||||||||| ||||| |||| |||||
Sbjct 410 GCCATCCTCATCTTGTTCCAGCAGCTGTTGAACAGCAGCTTGAACAGCTCCAAATTGATC 469
Query 410 GGGACTCTGATGGACAGAACAAGGATGCATCGTCTGTACC-TGGAACCGACATCGTTCTC 468
| ||| |||| | ||||| || |||||||| ||||| || |||||| ||||| ||||||
Sbjct 470 GAGACGCTGAAGAACAGAGTAAAGATGCATCCTCTGT-CCTTGGAACAGACATTGTTCTC 528
Query 469 TACAAGAGAATTGCGGAGGTTAAGGA-AAACGAGAGAAGAAGGACATTGGAGGAGATTTT 527
|||| ||||||||| || |||||||| ||| |||||||||||| | ||||| ||||||||
Sbjct 529 TACAGGAGAATTGCTGAAGTTAAGGAGAAA-GAGAGAAGAAGGGCCTTGGAAGAGATTTT 587
Query 528 GTATGCATTGGTGGTTCAAAAGTTCATGGAAT-CTAATG-TATCACTTGTACCAT-CAGT 584
|||||| || |||||||| |||||||||| || |||||| || |||||||||||| || |
Sbjct 588 GTATGCGTTAGTGGTTCAGAAGTTCATGG-ATGCTAATGTTA-CACTTGTACCATCCA-T 644
Query 585 AAGC-C--CATCTTCAGATCCGTCTGGTCGGGTTGATACTTGGCCGAC-CAAAG-TGGAG 639
|| | | ||||| | ||||| |||||||| |||||||||||||| || | || ||| |
Sbjct 645 AACCTCTTCATCTGCGGATCCATCTGGTCGAGTTGATACTTGGCCAACTC-TAGATGG-G 702
Query 640 AAACTTGAGCGGCTTCACTCGCCCG-AGATGTACGAGATGATTCACAACCATCTAGCCCT 698
|||||||| | ||||||||||| | || | || ||||||||||| || ||||| || |
Sbjct 703 GAACTTGAGAGACTTCACTCGCCTGAAG-TTTATGAGATGATTCAGAATCATCTTTCCAT 761
Query 699 CATTCTTGGAAGCAG-AATGGGTGATCTGAAC-TCTGTTGCTCAGATAAGCAAGCTCAGA 756
||||||| || | | | | | ||||||| || | ||||| ||||||||||| || ||
Sbjct 762 CATTCTTAAAAACCGCACT-GATGATCTG-ACAGCAGTTGCGCAGATAAGCAAACTTGGA 819
Query 757 GTTGGGCAAGTTTACGCTGCTTCTGTTATGTATGGATATTTCTTGAAGAGGGTGGACCAA 816
||||| || || || |||||||| || |||||||| |||||| |||||||| | || |||
Sbjct 820 GTTGGACAGGTATATGCTGCTTCGGTGATGTATGGGTATTTCCTGAAGAGGATCGATCAA 879
Query 817 AGGTTTCAGCTTGAGAAGACGATGAAGATTCTTCCTGGTGGGTTGGATGAAAGTAAAACA 876
||||||||||||||||||||||||| |||||| || ||||||| |||||| || | ||
Sbjct 880 AGGTTTCAGCTTGAGAAGACGATGAGGATTCTCCCAGGTGGGTCAGATGAAGGTGAGACT 939
Query 877 AGCGTTGAACAA-C---C--AGA-G--GAGA-AAACGACATATCA-G--GC-G--G---- 916
||| |||| ||| | | ||| | |||| |||| | ||| | | || | |
Sbjct 940 AGCATTGAGCAAGCAGGCCGAGATGTAGAGAGAAACTTC-TATGAAGAAGCAGAAGAGAC 998
Query 917 T-ATC---CT----C-TCAC-CCA-GAGGTTGGTTCATTTGCAGGCGGAGTT-AGTGCTA 964
| ||| || | ||| ||| || |||||||| |||| ||| || | | | ||| |
Sbjct 999 TTATCAGGCTGTTTCCTCAAACCAAGACGTTGGTTCGTTTGTAGGAGG-GATCAATGCCA 1057
Query 965 AG-GGC--TTTG-GCAGTGAGATTAAACCGTCCCGGTTAAGGTCATACGTGATGTCATTC 1020
| ||| ||| ||||||| || || | |||||||||| | ||||||| ||||| ||
Sbjct 1058 -GTGGCGGTTTTAGCAGTGATATGAAGCAATCCCGGTTAAAGACATACGTTATGTCCTTT 1116
Query 1021 GATGCG-GAGACGCTTCAGAGATACGCCACTATAAGATCAAGAGAAGCTGTTGGAATCAT 1079
|||| | || || ||||| || ||||| || |||||||| |||||| | ||||| || ||
Sbjct 1117 GATG-GAGAAACCCTTCAAAGGTACGCTACAATAAGATCTAGAGAATCGGTTGGGATAAT 1175
Query 1080 CGAGAAGCACACAGAGGCATTGTTTGGTAAGCCCGAGATTGTAATAACACCAGAAGGAAC 1139
|||||||| ||||| ||||||||||| | ||| |||||||| ||||| ||| |||| ||
Sbjct 1176 TGAGAAGCATACAGAAGCATTGTTTGGGAGGCCAGAGATTGTGATAACGCCACAAGGCAC 1235
Query 1140 GGTTGATTCATCGAAGGACGAACAGATAAAGATCAGCTTCG-GTGGAATGAAGAGGCTCG 1198
||||||| ||||||||||| || || |||||||||||| | ||| |||||||||| |
Sbjct 1236 TATTGATTCCTCGAAGGACGAGCATATCAAGATCAGCTTCAAG-GGATTGAAGAGGCTTG 1294
Query 1199 TCTTGGAGGCTGTAAC-TTTCGGGTCGTTCCTTTGGGATGTTGAGAGCCATGTAGA-TGC 1256
| ||||||||||| || ||| || || ||||| ||||| || |||||||||||||| | |
Sbjct 1295 TGTTGGAGGCTGTGACGTTT-GGTTCTTTCCTCTGGGACGTGGAGAGCCATGTAGACT-C 1352
Query 1257 TAGGTACCACTTTGTATTGAACT 1279
||||| ||||| ||| ||||||
Sbjct 1353 AAGGTATCACTTCGTACTGAACT 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5