BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg905007 Length=273 Score E Sequences producing significant alignments: (Bits) Value AT5G28500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 217 5e-56 AT3G04550.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 106 1e-22 > AT5G28500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:10477771-10479384 FORWARD LENGTH=1614 Length=1614 Score = 217 bits (117), Expect = 5e-56 Identities = 133/140 (95%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 134 GTGGGATGAAGTTGGATAGAGGATCGGTGTTGAAGGAGAAAGGAGTGAATGAGAGTTTAG 193 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 1208 GTGGGATGAAGTTGGATAGAGGATTGGTGTTGAAGGAGAAAGGAGTGAATGAGAGCTTAG 1267 Query 194 GGATGGTTGTTTTGGTGGTTAGGCCGCCGAGAgatgatgatgatgatgatTGGCAGATAA 253 | |||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||| Sbjct 1268 GAATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGATGATGATGA-G-T-GGCAGATAA 1324 Query 254 ATGATGAAGATTGGGATTAG 273 |||||||||||||||||||| Sbjct 1325 ATGATGAAGATTGGGATTAG 1344 > AT3G04550.1 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:1225922-1227436 FORWARD LENGTH=1515 Length=1515 Score = 106 bits (57), Expect = 1e-22 Identities = 87/100 (87%), Gaps = 7/100 (7%) Strand=Plus/Plus Query 153 AGGATC-GGTGTTGAAGGAGAAAGGA-GTGAATGAGAGTTTAGGGATGGTTGTTTTGGTG 210 |||||| | | ||||||| || | || ||||| ||||||||||||||||||||||||||| Sbjct 1272 AGGATCAGAT-TTGAAGGCGAGA-GAGGTGAAGGAGAGTTTAGGGATGGTTGTTTTGGTG 1329 Query 211 GTTAGGCCGCCGAGAgatgatgatgatgatgatTGGCAGA 250 || |||||||| | ||| || ||||||||||||||||||| Sbjct 1330 GTGAGGCCGCC-A-AGA-GAAGATGATGATGATTGGCAGA 1366 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12516669501 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5