BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg905145 Length=1620 Score E Sequences producing significant alignments: (Bits) Value AT3G21240.1 | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 ... 2390 0.0 AT1G51680.1 | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA li... 1319 0.0 > AT3G21240.1 | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 | chr3:7454269-7457379 REVERSE LENGTH=1964 Length=1964 Score = 2390 bits (1294), Expect = 0.0 Identities = 1522/1631 (93%), Gaps = 20/1631 (1%) Strand=Plus/Plus Query 4 AGTAGTAGTAATGACGTCATTTTCCGGTCGAAATTGCCGGATATTTATATCCCTAACCAC 63 ||| |||||||||||||||||||||| |||| |||||| ||||| || |||||||||||| Sbjct 112 AGT-GTAGTAATGACGTCATTTTCCGATCGAGATTGCCTGATATATACATCCCTAACCAC 170 Query 64 CTACCACTCCACGACTACATCTTCGAAAACATCTCTGAGTTCGCCGCTAAACCATGTTTG 123 || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 171 CTCCCACTCCACGACTACATCTTCGAAAATATCTCAGAGTTCGCCGCTAAGCCATGCTTG 230 Query 124 ATCAACGGTCCCACCGGCGAGGTATACACCTACGCCGACGTACACGCCATATCGCGGAAA 183 |||||||||||||||||||| ||||||||||||||||| || |||| | ||| |||||| Sbjct 231 ATCAACGGTCCCACCGGCGAAGTATACACCTACGCCGATGTCCACGTAACATCTCGGAAA 290 Query 184 CTCGCCGCCGGTCTTCA-AATAGTCGGCGTGAACCAACACGACGTCGTAATGCTCCTCCT 242 ||||||||||||||||| || |||||||||| ||||||||||| |||||| ||||||| Sbjct 291 CTCGCCGCCGGTCTTCATAA-CCTCGGCGTGAAGCAACACGACGTTGTAATGATCCTCCT 349 Query 243 CCCGAACTCTCCAGAAGTAGTCCTCACTTTCCTCGCAGCTTCAC-TCATCGGCGCAATCA 301 |||||||||||| |||||||||||||||||||| || || || | ||||||||||||||| Sbjct 350 CCCGAACTCTCCTGAAGTAGTCCTCACTTTCCTTGCCGCCTC-CTTCATCGGCGCAATCA 408 Query 302 CCACTTCAGCGAACCCGTTCTTCACTCCGGCGGAGATCTCTAAACAAGCCAAAGCCTCCG 361 |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 409 CCACCTCCGCGAACCCGTTCTTCACTCCGGCGGAGATTTCTAAACAAGCCAAAGCCTCCG 468 Query 362 CCGCGAAACTCATCGTCACTCAATCTCGTTACTTCGATAAAATCAAGAACCTCCAAAACG 421 | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 469 CGGCGAAACTCATCGTCACTCAATCCCGTTACGTCGATAAAATCAAGAACCTCCAAAACG 528 Query 422 ACGGCGTCTTGATCGTCACCACCGACTCCGACGTCATCCCCGAAAACTGCCTCCGCTTCT 481 ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 529 ACGGCGTTTTGATCGTCACCACCGACTCCGACGCCATCCCCGAAAACTGCCTCCGTTTCT 588 Query 482 CCGAGTTGACTCAGTCCGGCG-ACCTCCGA---G--TCAACT-CC---G-AGATTTCGCC 530 ||||||| |||||||||| | ||| ||| | |||| | || | |||||||||| Sbjct 589 CCGAGTTAACTCAGTCCGAAGAACC-ACGAGTGGACTCAA-TACCGGAGAAGATTTCGCC 646 Query 531 AGACGACGTCGTGGCGCTTCCTTTCTCCTCTGGCACGACGGGTCTGCCCAAGGGAGTGAT 590 ||| ||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct 647 AGAAGACGTCGTGGCGCTTCCTTTCTCATCCGGCACGACGGGTCTCCCCAAAGGAGTGAT 706 Query 591 GCTAACACATAAAGGTCTCGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAACCCAAA 650 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 707 GCTAACACACAAAGGTCTAGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAATCCGAA 766 Query 651 TCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATATCTACGC 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 767 TCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATATATACGC 826 Query 711 TCTTAACTCCATCATGCTCTGTAGTCTCAGAGTCGGTGCCACGATCTTGATAATGCCTAA 770 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 827 TCTCAACTCCATCATGCTCTGTAGTCTCAGAGTTGGTGCCACGATCTTGATAATGCCTAA 886 Query 771 ATTCGAGATCACTCTCTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGTGGCTATGGT 830 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 GTTCGAAATCACTCTCTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGTGGCTATGGT 946 Query 831 CGTGCCACCGATCGTTTTAGCTATTGCAAAGTCGCCGGAGACGGAGAAGTATGATCTGAG 890 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 947 CGTGCCACCGATCGTTTTAGCTATCGCGAAGTCGCCGGAGACGGAGAAGTATGATCTGAG 1006 Query 891 TTCGGTTAGGATGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAAGAACTTGAAGATGCTAT 950 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1007 CTCGGTTAGGATGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAGGAGCTTGAAGATGCTAT 1066 Query 951 TAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAGAAGCGGGTCC 1010 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1067 TAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAGAAGCAGGTCC 1126 Query 1011 GGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCGTTTCCAGTGAAATCAGGAGCATG 1070 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1127 GGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCGTTTCCAGTGAAGTCAGGAGCATG 1186 Query 1071 TGGTACAGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACCGGAGATTCCTT 1130 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1187 TGGTACGGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACAGGAGATTCTTT 1246 Query 1131 GCCTAGGAATCAAGCC-GGCGAAATCTGCATTCGTGGCAACCAAATCATGAAAGGCTATC 1189 ||||||||| ||| || |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1247 GCCTAGGAA-CAAACCCGGCGAAATATGCATCCGTGGCAACCAAATCATGAAAGGCTATC 1305 Query 1190 TCAATGATCCGGTGGCTACCGCATCGACGATCGATAAAGACGGTTGGCTTCACACAGGAG 1249 ||||||| || |||| || |||||||||||||||||||| |||||||||||||| |||| Sbjct 1306 TCAATGACCCCTTGGCCACGGCATCGACGATCGATAAAGATGGTTGGCTTCACACTGGAG 1365 Query 1250 ACGTTGGATTCATCGATGACGACGACGAGCTTTTCATTGTCGATAGATTGAAAGAACTCA 1309 |||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 1366 ACGTCGGATTTATCGATGATGACGACGAGCTTTTCATTGTGGATAGATTGAAAGAACTCA 1425 Query 1310 TCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCCTCATAGGTCACC 1369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1426 TCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCCTCATAGGTCATC 1485 Query 1370 CTGAAATCAATGATGTTGCTGTCGTCGCAATGAAAGAAGAAGATGCTGGTGAGGTTCCTG 1429 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1486 CAGAAATCAATGATGTTGCTGTCGTCGCCATGAAGGAAGAAGATGCTGGTGAGGTTCCTG 1545 Query 1430 TGGCGTTTGTGGTGAGAACGAAAGAGTCGAATATATCCGAAGATGAAATCAAGGAATTCG 1489 | ||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||| Sbjct 1546 TTGCGTTTGTGGTGAGATCGAAAGATTCAAATATATCCGAAGATGAAATCAAGCAATTCG 1605 Query 1490 TGTCAAAACAGGTTGTGTTTTATAAGAGGATCAATAAAGTGTTCTTCACTGACTCTATTC 1549 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1606 TGTCAAAACAGGTTGTGTTTTATAAGAGAATCAACAAAGTGTTCTTCACTGACTCTATTC 1665 Query 1550 CAAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAAGACTAGCAAATGGAT 1609 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1666 CTAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAAGACTAGCAAATGGAT 1725 Query 1610 TAATGAACTAG 1620 ||||||||||| Sbjct 1726 TAATGAACTAG 1736 > AT1G51680.1 | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA ligase 1 | chr1:19158752-19161552 REVERSE LENGTH=2029 Length=2029 Score = 1319 bits (714), Expect = 0.0 Identities = 1338/1636 (82%), Gaps = 56/1636 (3%) Strand=Plus/Plus Query 15 TGACGTCATTTTCCGGTCGAAA-TTGCCGGATATTTATATCCCTAACCACCTACCACTCC 73 ||||||||||||||| || ||| || ||||||||||| ||||| ||||||||| | |||| Sbjct 151 TGACGTCATTTTCCGATC-AAAGTTACCGGATATTTACATCCCGAACCACCTATCTCTCC 209 Query 74 ACGACTACATCTTCGAAAACATCTCTGAGTTCGCCGCTAAACCATGTTTGATCAACGGTC 133 |||||||||||||| |||||||||| || |||||| |||| || || | |||||||| | Sbjct 210 ACGACTACATCTTCCAAAACATCTCCGAATTCGCCACTAAGCCTTGCCTAATCAACGGAC 269 Query 134 CCACCGGCGAGGTATACACCTACGCCGACGTACACGCCATATCGCG-GAAACTCGCCGCC 192 | |||||| | || ||||| ||| ||||||| |||| ||| || || ||| |||||||| Sbjct 270 CAACCGGCCACGTGTACACTTACTCCGACGTCCACGTCATCTCCCGCCAAA-TCGCCGCC 328 Query 193 GGTCTTCA-AATAGTCGGCGTGAACCAACACGACGTCGTAATGCTCCTCCTCCCGAACTC 251 | |||| || | ||||||| |||||| |||||||||| |||||||||||||| |||| Sbjct 329 AATTTTCACAA-ACTCGGCGTTAACCAAAACGACGTCGTCATGCTCCTCCTCCCAAACTG 387 Query 252 TCCAGAAGTAGTCCTCACTTTCCTCGCAGCTTCAC-TCATCGGCGCAATCACCACTTCAG 310 ||| ||| | |||||| |||||||||| || || | || |||||||| | |||| | | Sbjct 388 TCCCGAATTCGTCCTCTCTTTCCTCGCCGCCTC-CTTCCGCGGCGCAACCGCCACCGCCG 446 Query 311 CGAACCCGTTCTTCACTCCGGCGGAGATCTCTAAACAAGCCAAAGCCTCCGCCGCGAAAC 370 | ||||| |||||||||||||||||||| |||||||||||||||||||| | | |||| Sbjct 447 CAAACCCTTTCTTCACTCCGGCGGAGATAGCTAAACAAGCCAAAGCCTCCAACACCAAAC 506 Query 371 TCATCGTCACTC-AATCTCGTTACTTCGATAAAATC-AAGAACCTCCAAA--ACGACGGC 426 |||| |||| | || |||||||| |||| |||||| || || || ||| ||||||| Sbjct 507 TCATAATCAC-CGAAGCTCGTTACGTCGACAAAATCAAACCACTTCAAAACGACGACGGA 565 Query 427 GTCTTGATCGTCACCA-C--CGACTCCG-A--CGT--C-ATCCCCGAAAACTGCCTCCGC 477 || | |||||| || | |||| || | ||| | ||||| ||| |||||||||| Sbjct 566 GTAGTCATCGTCTGCATCGACGACAACGAATCCGTGCCAATCCCTGAAGGCTGCCTCCGC 625 Query 478 TTCTCCGAGTTGACTCAGTC--C-GGCGA--CCTCCG-AGTCA---ACTC---CGAGATT 525 ||| |||||||||||||||| | ||| | || | ||||| |||| |||||| Sbjct 626 TTCACCGAGTTGACTCAGTCGACAACCGAGGCATCAGAAGTCATCGACTCGGTGGAGATT 685 Query 526 TCGCCAGACGACGTCGTGGCGCTTCCTTTCTCCTCTGGCACGACGGG-TCTGCCCAAGGG 584 || || |||||||| ||||| || |||| |||||||||||||||||| | | || || || Sbjct 686 TCACCGGACGACGTGGTGGCACTACCTTACTCCTCTGGCACGACGGGAT-TACCAAAAGG 744 Query 585 AGTGATGCTAACACATAAAGGTCTCGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAA 644 ||||||||| || || || || || ||||||||||| || |||||||||||||||||||| Sbjct 745 AGTGATGCTGACTCACAAGGGACTAGTCACGAGCGTTGCTCAGCAAGTCGACGGCGAGAA 804 Query 645 CCCAAATCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATAT 704 ||| |||||||| ||| |||| || ||||| || |||||||| ||||| ||||| ||||| Sbjct 805 CCCGAATCTTTATTTCCACAGCGATGACGTCATACTCTGTGTTTTGCCCATGTTTCATAT 864 Query 705 CTACGCTCTT-AACTCCATCATGCTCTGTAGTCTCAGAGTCGGTGCCACGA-TCTTGATA 762 ||||||| || ||||| |||||| | ||| |||| ||||| ||||| ||| || ||||| Sbjct 865 CTACGCT-TTGAACTCGATCATGTTGTGTGGTCTTAGAGTTGGTGCGGCGATTC-TGATA 922 Query 763 ATGCCTAAATTCGAGATCACTCT-CTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGT 821 ||||| || || ||||||| ||| | | || |||| ||| || ||||||||||| ||||| Sbjct 923 ATGCCGAAGTTTGAGATCAATCTGC-TATTGGAGCTGATCCAGAGGTGTAAAGTGACGGT 981 Query 822 GGCTATGGTCGTGCCACCGATCGTTTTAGCTATTGCAAAGTCGCCGGAGACGGAGAAGTA 881 |||| | | || || ||||| || || || ||||| ||||| |||||||||||||||| Sbjct 982 GGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGCGAAGTCTTCGGAGACGGAGAAGTA 1041 Query 882 TGATCTGAGTTCGGTTAGGA-TGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAAGAACTTG 940 |||| |||| || | || || |||| || ||||| || |||||||||||||||||||||| Sbjct 1042 TGATTTGAGCTC-GATAAGAGTGGTGAAATCTGGTGCTGCTCCTCTTGGTAAAGAACTTG 1100 Query 941 AAGATGCTATTAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAG 1000 ||||||| ||| ||| ||||||||||| ||||| || |||||||| || || ||||| | Sbjct 1101 AAGATGCCGTTAATGCCAAGTTTCCTAATGCCAAACTCGGTCAGGGATACGGAATGACGG 1160 Query 1001 AAGCGGGTCCGGTGCTAGCAATGTCGTTAGGGTTTGCTAAAG-AGCCGTTTCCAGTGAAA 1059 |||| ||||| |||||||||||||||||||| ||||| |||| | || ||||| || || Sbjct 1161 AAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGC-AAAGGAACCTTTTCCGGTTAAG 1219 Query 1060 TCAGGAGCATGTGGTACAGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACC 1119 |||||||| |||||||| || || || || || |||||||| ||| |||||||||||||| Sbjct 1220 TCAGGAGCTTGTGGTACTGTTGTAAGAAATGCTGAGATGAAAATAGTTGATCCAGACACC 1279 Query 1120 GGAGATTC-CTTGCCTAGGAATCAAGCCGGCGAAATCTGCATTCGTGG-CAACCAAATCA 1177 |||||||| ||| | ||||||||| |||| || || || |||||||| || ||| |||| Sbjct 1280 GGAGATTCTCTTTCG-AGGAATCAACCCGGTGAGATTTGTATTCGTGGTCA-CCAGATCA 1337 Query 1178 TGAAAGGCTATCTCAATGATCCGGTGGCTACCGCATCGACGATCGATAAAGACGGTTGGC 1237 ||||||| || ||||| |||||| ||||| ||| ||| || |||||||||||||||| Sbjct 1338 TGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGACCATTGATAAAGACGGTTGGC 1397 Query 1238 TTCACACAGGAGACGTTGGATTCATCGATGACGACGACGAGCTTTTCATTGTCGATAGAT 1297 |||| || ||||| ||||||| ||||||||||| |||||||||||||| || ||| ||| Sbjct 1398 TTCATACTGGAGATATTGGATTGATCGATGACGATGACGAGCTTTTCATCGTTGATCGAT 1457 Query 1298 TGAAAGAACTCATCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCC 1357 |||||||||| |||||||| ||||| ||||| || ||||| |||||||||||| || | | Sbjct 1458 TGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCCGGCTGAGCTAGAGGCTTTGC 1517 Query 1358 TCATAGGTCACCCTGAAATCAATGATGTTGCTGTCGTCGCAATGAAAGAAGAAG-ATGCT 1416 |||| ||||| ||||| || | |||||||||||| ||||||||||||||||||| | ||| Sbjct 1518 TCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGCAATGAAAGAAGAAGCA-GCT 1576 Query 1417 GGTGAGGTTCCTGTGGCGTTTGTGGTGAGAA-CGAAAGAGTCGAA-TATATCCGAAGATG 1474 ||||| |||||||| || |||||||||| || |||| || ||| | | |||| ||||||| Sbjct 1577 GGTGAAGTTCCTGTTGCATTTGTGGTGA-AATCGAAGGATTCGGAGT-TATCAGAAGATG 1634 Query 1475 AAATCAAGGAATTCGTGTCAAAACAGGTTGTGTTTTATAAGAGGATCAATAAAGTGTTCT 1534 | | ||| |||||||||| ||||||||||||||||| ||||| ||||| |||||||||| Sbjct 1635 ATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAGAATCAACAAAGTGTTCT 1694 Query 1535 TCACTGACTCTATTCCAAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAA 1594 ||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || |||| Sbjct 1695 TCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATATTGAGGAAAGATCTGAGGGCAA 1754 Query 1595 GACTAGCAAATGGATT 1610 ||||||||||||||| Sbjct 1755 AACTAGCAAATGGATT 1770 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80019668730 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5