BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905694
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25290.1 | Symbols: | Auxin-responsive family protein | chr... 1890 0.0
AT4G12980.1 | Symbols: | Auxin-responsive family protein | chr... 566 2e-160
> AT3G25290.1 | Symbols: | Auxin-responsive family protein | chr3:9208937-9210599
FORWARD LENGTH=1446
Length=1446
Score = 1890 bits (1023), Expect = 0.0
Identities = 1126/1177 (96%), Gaps = 2/1177 (0%)
Strand=Plus/Plus
Query 4 TCTTCTTCTTCCGTAAGAATCTCTCTCTCCTTCATTTTCTTGGCTCTGCTAATCTCACCG 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 TCTTCTTCTTCCGTAAGAATCTCTCTCTCCTTCATTTTCTTGGCTCTGCTAATCTCACCG 84
Query 64 TCTGTCTCACAAACCTGTAAGTCACAGACGTTTTCCGGCGATAAAACTTACCCTCACTGC 123
|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 85 GCTGTGTCACAAACATGTAAGTCACAGACTTTTTCCGGCGATAAAACTTACCCTCACTGC 144
Query 124 CTTGACCTCCCTCAACTCAAAGCCTTCCTACACTATTCCTACGATGCCTCCAACACAAGT 183
||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||| |
Sbjct 145 CTTGACCTCCCTCAACTCAAAGCCTTCCTTCATTATTCCTATGATGCCTCTAACACAACT 204
Query 184 CTCGCCGTCGTCTTCTCTGCTCCGCCGGCAAAGCCTGGTGGATGGATCGCGTGGGCGATT 243
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 205 CTGGCCGTCGTCTTCTCTGCTCCGCCGGCAAAGCCTGGCGGATGGATCGCGTGGGCGATT 264
Query 244 AATCCAACGGCTACCGGTATGGTCGGAGCTCAAACCCTTGTCGCTTACAAGGATCCAGGT 303
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 265 AATCCAAAGGCTACCGGTATGGTCGGATCTCAAACCCTTGTCGCTTACAAGGATCCAGGT 324
Query 304 AATGGTGTTGCCGTTGTGAAGACGCTAAACATTAGCTCCTATAGTTCGCTGATTCCGTCG 363
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 325 AATGGTGTTGCCGTGGTGAAGACGCTAAACATTAGCTCCTATAGCTCGCTGATTCCGTCG 384
Query 364 AAATTGGCGTTTGATGTTTGGGATATGAAAGCCGAGGAGGCGGCGAGGGATGGAGGAACT 423
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 385 AAGCTGGCGTTTGATGTTTGGGATATGAAAGCCGAGGAGGCGGCGAGAGATGGAGGAAGT 444
Query 424 TTGAGAATCTTTGCTAGGGTTAAGGTTCCGGCTGATTTGGTTGCAAAGGGAAAGGTTAAT 483
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 445 TTGAGAATCTTTGCTAGGGTTAAGGTTCCGGCTGATTTGGTGGCAAAGGGAAAGGTTAAT 504
Query 484 CAGGTTTGGCAAGTTGGTTCTGAATTAGGTCCTGGTGGAATGATTGGTAGGCACGCTTTC 543
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 505 CAGGTTTGGCAAGTTGGTCCTGAATTAGGTCCTGGTGGAATGATTGGGAGGCACGCTTTC 564
Query 544 GACCCGTCGAATCTCGCTTCTATGGGCTCTCTTGATTTAAAAGGTGACAACAGCTGTGGC 603
||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 565 GACTCGGCGAATCTCGCTTCTATGAGCTCTCTTGATTTAAAAGGTGACAACAGCGGTGGC 624
Query 604 ACAATCTCTGGGGGCGGCGAAGTAAATGCCAAAATCAAGAACAGAAATATTCATGGGATA 663
||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 625 ACAATCTCTGGAGGCGACGAGGTAAATGCCAAGATCAAGAACAGAAATATTCATGGGATA 684
Query 664 TTAAACGCGGTGAGTTGGGGAATTTTGTTTCCGATAGGAGCAATAATAGCCAGGTACATG 723
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TTAAACGCAGTGAGTTGGGGAATTTTGTTTCCGATAGGAGCAATAATAGCCAGGTACATG 744
Query 724 AGAGTATTTGAATCCGCCGATCCGGCCTGGTTTTACCTCCATGTGTCTTGTCAATTCTCT 783
||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 745 AGAGTATTTGACTCGGCCGATCCGGCCTGGTTTTACCTCCACGTTTCTTGTCAATTCTCT 804
Query 784 GCTTATGTCATCGGTGTTGCCGGTTGGGCCACCGGACTCAAGCTAGGCAACGAGTCAGCG 843
||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| | |
Sbjct 805 GCTTATGTCATCGGTGTTGCCGGTTGGGCTACCGGACTTAAGCTCGGTAACGAGTCCGAG 864
Query 844 GGTATTCGCTTCTCCGCCCACCGTAACATCGGTATTGCCCTCTTCACCCTTGCCACCATT 903
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 865 GGTATTCGCTTCTCCGCCCACCGTAACATCGGCATTGCCCTCTTCACCCTTGCCACCATT 924
Query 904 CAGATGTTTGCGATGTTGTTGCGGCCTAAGAAAGATCACAAGTACAGATTCTATTGGAAT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CAGATGTTTGCGATGTTGTTGCGGCCTAAGAAAGATCACAAGTACAGATTCTATTGGAAT 984
Query 964 ATCTACCACCATGGAGTCGGCTATGCAATCCTCATCCTCGGGATCATTAATGTCTTCAAA 1023
|||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||
Sbjct 985 ATCTACCACCATGGAGTCGGTTATGCGATCCTCACCCTTGGGATCATTAATGTCTTCAAA 1044
Query 1024 GGTCTCAACATATTGAAACCACAAGACACGTACAAGACGGCTTACATTGCAGTGATTGC- 1082
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GGTCTCAACATCTTGAAACCACAAGACACGTACAAGACGGCTTACATTGCAGTGATTGCC 1104
Query 1083 GATTCTTGGAGGAATTGCTTTGCTCTTAGAAGCCATCACTTGGGTCGTTGTACTCAAGAG 1142
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 G-TTCTTGGAGGCATTGCTTTGCTCTTAGAAGCCATCACTTGGGTCGTTGTACTCAAGAG 1163
Query 1143 AAAATCAAACAACTCAATGAAGCCTCTTAGGACATAA 1179
||||||||||||||||||||||||||||||||| |||
Sbjct 1164 AAAATCAAACAACTCAATGAAGCCTCTTAGGACCTAA 1200
> AT4G12980.1 | Symbols: | Auxin-responsive family protein | chr4:7589395-7591102
REVERSE LENGTH=1488
Length=1488
Score = 566 bits (306), Expect = 2e-160
Identities = 903/1183 (76%), Gaps = 74/1183 (6%)
Strand=Plus/Plus
Query 6 TTCTTCTT-CCGTAAGAATCTCTCTCTC-CTTCATTTTCTTGGCTCTGCTAATCTCACCG 63
|||||||| || | ||||||||||| || ||| | |||| |||| | ||| ||||||||
Sbjct 34 TTCTTCTTACC-TTAGAATCTCTCTTTCTTTTC-TCTTCTGGGCTTTACTACTCTCACCG 91
Query 64 TCTGTCTCACA---AAC--C-TGTAAGTCACAGACGTTTTCCGGCGAT-AAAACTTACCC 116
|||| ||||| | | | ||| ||||||||| |||||||||| | ||| |||||||
Sbjct 92 GCTGTGTCACAGTCATCTTCTTGTTCGTCACAGACATTTTCCGGCG-TCAAATCTTACCC 150
Query 117 TCACTGCCTTGACCTCCCTCAACTCAAAGCC-TTCCTACACTATTCCTACGATGCCTCCA 175
|||||| || ||||||||| | || |||||| || || || || || || || || || |
Sbjct 151 TCACTGTCTCGACCTCCCTGATCTTAAAGCCATT-CTCCATTACTCTTATGACGCATCTA 209
Query 176 ACACAAGTCTCGCCGTCGTCTTCTCTGCTCCGCCGGCAAAGCCTGGTGGATGGATCGCGT 235
|||||| ||||||||| || ||||||||||| ||| |||| |||||||| |||||||| |
Sbjct 210 ACACAACTCTCGCCGTTGTTTTCTCTGCTCCACCGTCAAAACCTGGTGGTTGGATCGCTT 269
Query 236 GGGCGATTAATCC-AACGGCTACCGGTATGGTC-GGAGCTCAAACCCTTGTCGCTTAC-A 292
|||| ||||| || || | ||||| |||| | ||| ||||| |||| || || | | |
Sbjct 270 GGGCTATTAACCCTAA-ATCCACCGGCATGG-CTGGATCTCAAGCCCTCGTTGCCT-CTA 326
Query 293 AGGATCC-AGGTAATGGTGTTGCCGTT--GTGAAGACGCTAAACATTAG-CTCCTATAGT 348
|||| || | | | || |||| | || |||| ||| || |||| | | ||| || ||
Sbjct 327 AGGACCCTA-GCACCGGCGTTG-C-TTCCGTGACGACCCTTAACA-TCGTCTCTTACAGC 382
Query 349 TCGCTGATTCCGTCGAAATTGGCGTTTGATGTTTGGGATATGAAAGCCGAGGAGGCGGCG 408
|| ||| |||| |||||| || | ||||| || |||||| | || || |||||||||||
Sbjct 383 TCTCTGGTTCCCTCGAAACTGTCCTTTGACGTGTGGGATGTTAAGGCGGAGGAGGCGGCT 442
Query 409 AGGGATGGAGGAACTTTGA-GAATCTTTGCTAGGGTTAAGGTTCCGGCTGATTTGGTTGC 467
| || || ||| |||| | |||||||||| | || ||||||||||| ||||| | ||
Sbjct 443 AATGACGGTGGAGCTTT-ACGAATCTTTGCGAAAGTGAAGGTTCCGGCGGATTTAGCGGC 501
Query 468 AAAG-GGAAAGGTTAATCAGGTTTGGCAAGTTGGTTCTGAATTAGGTCCTGGTGGAATGA 526
|| || |||||||| ||||||||||| |||||| | | | | || || ||| | ||
Sbjct 502 -GAGTGGGAAGGTTAACCAGGTTTGGCAGGTTGGTCCGGGAGT--GT-CTAATGGGAGGA 557
Query 527 TTGGTAGG--CACGCTTTCGACCCGT-CGAATC-TCGCTTCTA-TGGGCTCTCTTGATTT 581
| ||| || | |||| | | || | |||| | | || | |||| || || |||||
Sbjct 558 -T-ACAGGCTCATGATTTC-AGCGGTCCCAATCTTAAC-TC-AGTGGGATCACTCGATTT 612
Query 582 AAAAGGTGA-CAACAGCTGTGGCACAATCT-CTG-GG-GGCGGCG-AAGTAAATGCCAAA 636
|| || || || | | | | | | ||| | | || || || | || ||| | | |
Sbjct 613 AACCGG-GACCACCCCCGGAGTCCCTGTCTCCGGAGGTGGTGGTGCCGGT-AATTCTAGA 670
Query 637 ATCAAGAACAGAAATATTCATGGGATATTAAACGCGGTGAGTTGGGGAATTTTGTTTCCG 696
||| | || |||||||| ||||| ||||| ||||| |||||||||||| || | |||||
Sbjct 671 ATCCACAAGAGAAATATCCATGGAATATTGAACGCAGTGAGTTGGGGACTTCTATTTCCC 730
Query 697 ATAGGAGCAATAATAGCCAGGTACATGAGAGTATTTGAATCCGCCGATCCGGCCTGGTTT 756
|| |||||||| ||||| ||||| |||||| | |||||||| || ||||| || ||||||
Sbjct 731 ATTGGAGCAATGATAGCTAGGTATATGAGAATCTTTGAATCAGCAGATCCTGCTTGGTTT 790
Query 757 TACCTCCATGTGTCTTGTCAATTCTCTGCTTATGTCATCGGTGTTGCCGGTTGGGCCACC 816
|||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 791 TACCTCCACGTGTCATGCCAATTCTCTGCTTATGTCATCGGTGTTGCCGGATGGGCCACC 850
Query 817 GGACTCAAGCTAGG--CAACGAGTC-AGCGGGTATTC-GCTTCTCCGCCCACCGTAACAT 872
||||||||||| || || || || | || ||||| | | | | | ||||| |||||
Sbjct 851 GGACTCAAGCTTGGTTCA--GAATCTAAAGG-TATTCAG-TACAACACTCACCGGAACAT 906
Query 873 CGGTAT-TGCCCTCTTCACCCTTGCCAC-CATTCAGATGTTTGCGATGTTGTTGCGGCCT 930
||| || || | ||||| | | ||||| | ||||||||||||||||| ||||||||||
Sbjct 907 CGGCATCTGTC-TCTTCTCTATAGCCACTC-TTCAGATGTTTGCGATGCTGTTGCGGCC- 963
Query 931 AAGAAAG-ATCACAAGTACAGATTC-TATTGGAATATCTACCACCATGGAGTCGGCTA-T 987
||| ||| | ||||||| |||||| | ||||||||| |||||||| ||||| || || |
Sbjct 964 AAGGAAGGACCACAAGTTTAGATTCGT-TTGGAATATTTACCACCACGGAGTTGGATACT 1022
Query 988 GCAATCCTCATCCTCGGGATCATTAATGTCTTCAAAGGTCTCAACATATTGAAACCACAA 1047
| ||||||||||| || ||||| ||||| ||||||||||| | ||| ||||| ||| ||
Sbjct 1023 -CTATCCTCATCCTTGGAATCATCAATGTTTTCAAAGGTCTTAGCATCTTGAATCCA-AA 1080
Query 1048 G-ACACGTACAAGACGGCTTACATTGCAGTGATTGCGATTCTT-GGAGGAATTGCTTTGC 1105
| | || |||||||||||||| || || ||||||| || ||| ||||| || | || |
Sbjct 1081 GCATACTTACAAGACGGCTTATATCGCTGTGATTGGGAC-CTTAGGAGGCATCACGTTAC 1139
Query 1106 TCTTAGAAGCCATCACTTGGGTCGTTGTACTCAAGAGAAAATC 1148
|||| |||| | ||||||||| |||| ||||||||||||||
Sbjct 1140 TCTTGGAAGTTGTTACTTGGGTCATTGTCCTCAAGAGAAAATC 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5