BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905714
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10660.1 | Symbols: CPK2, ATCPK2 | calmodulin-domain protein... 1989 0.0
AT5G04870.1 | Symbols: CPK1, ATCPK1 | calcium dependent protein... 1279 0.0
> AT3G10660.1 | Symbols: CPK2, ATCPK2 | calmodulin-domain protein
kinase cdpk isoform 2 | chr3:3331398-3334268 REVERSE LENGTH=2142
Length=2142
Score = 1989 bits (1077), Expect = 0.0
Identities = 1172/1218 (96%), Gaps = 6/1218 (0%)
Strand=Plus/Plus
Query 1 ACAAAGTCTGAATCCAAGCAAGAGACAACAAAACCAGAAACAACGTCTGAAACCAAGCCG 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 388 ACAAAGTCTGAATCCAAGCCAGAGACAACAAAACCAGAAACAACGTCTGAAACCAAGCCA 447
Query 61 GAGACGAAACCTGAACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GAGACGAAAGCTGAACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTT 507
Query 121 AGAACTGAGTCAGTGTTGCAGAGGAAAACTGAAAACTTTAAAGAGTTCTATTCATT-GGG 179
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 508 AGAACTGAGTCAGTGTTGCAGAGGAAAACTGAAAACTTTAAGGAGTTCTATTCATTAGGG 567
Query 180 AAGGAAACTTGGACAAGGCCAATTTGGGACGACGTTTTTATGCCTTGAGAAAGGTACGGG 239
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 568 -AGGAAACTTGGACAAGGGCAATTTGGGACGACGTTTTTATGCCTTGAGAAAGGTACTGG 626
Query 240 GAACGAGTATGCGTGTACGTCGATTTCCAAGAGGAAGCTTTTGACGGATGAGGACGTTGA 299
|||||| |||||||| | ||||||||||||||||||||||||||| |||||||| |||||
Sbjct 627 GAACGAATATGCGTGCAAGTCGATTTCCAAGAGGAAGCTTTTGACTGATGAGGATGTTGA 686
Query 300 AGATGTGAGAAGGGAGATTCAGATAATGCATCACTTGGCTGGTCATCCAAATGTTATATC 359
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 687 AGATGTGAGAAGAGAGATTCAGATAATGCATCACTTGGCTGGTCATCCGAATGTTATATC 746
Query 360 TATTAAAGGCGCTTATGAGGATGTTGCTGCGGTACACCTTGTGATGGAGTTGTGTTCGGG 419
||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 747 TATTAAAGGTGCTTATGAGGATGTTGTTGCGGTACATCTTGTGATGGAGTTGTGTTCGGG 806
Query 420 TGGCGAGCTTTTTGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TGGCGAGCTTTTTGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGA 866
Query 480 GCTTGCGAGAACCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GCTTGCGAGAACCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCG 926
Query 540 AGACCTCAAGCCCGAGAATTTTCTATTCGTTAGTAAAGAGGAAGATTCCCTCTTGAAAAC 599
||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 927 GGACCTCAAGCCAGAGAATTTTCTATTTGTTAGTAGAGAGGAAGATTCCCTGTTGAAAAC 986
Query 600 GATCGACTTTGGACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 GATCGACTTTGGACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGG 1046
Query 660 TAGTCCGTATTATGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 TAGTCCGTATTATGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGT 1106
Query 720 GTGGAGTGCTGGTGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTTTGGGCCGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1107 GTGGAGTGCTGGTGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTCTGGGCCGA 1166
Query 780 AACCGAACAAGGTATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 AACCGAACAAGGTATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCC 1226
Query 840 ATGGCCAAGCATCTCTGAAAGTGCAAAAGACTTGGTGAGGAAAATGCTTGTTCGGGACCC 899
||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct 1227 ATGGCCAAGCATCTCTGAAAGCGCGAAAGACTTGGTAAGGAAAATGCTTGTTCGAGACCC 1286
Query 900 CACGCGAAGACTAACCGCACATCAAGTATTATGTCATCCATGGGTACAGATTGACGGTGT 959
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 CAAGCGAAGACTAACCGCACATCAAGTATTATGTCATCCATGGGTACAGATTGACGGTGT 1346
Query 960 GGCTCCAGATAAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 GGCTCCAGATAAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAAT 1406
Query 1020 GAACAAGTTCAAGAAAATGGCTCTTAGATTTTTTCAACTT-GT-CTTATCCGAAGAAGAA 1077
|||||||||||||||||||||||||||| | | | || | |||||| |||||||||
Sbjct 1407 GAACAAGTTCAAGAAAATGGCTCTTAGAGTCAT--AGCTGAGAGCTTATCTGAAGAAGAA 1464
Query 1078 ATAGCCGGTTTAAAAGAAATGTTCAAGATGATTGACACAGACAACAGTGGTCAGATAACT 1137
||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||| |||
Sbjct 1465 ATAGCCGGTTTAAAACAAATGTTCAAGATGATAGACGCAGACAATAGTGGTCAGATCACT 1524
Query 1138 TTTGAAGAACTGAAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAAATT 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1525 TTTGAAGAACTGAAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAGATT 1584
Query 1198 CTTGATCTAATGCAAGCT 1215
||||||||||||||||||
Sbjct 1585 CTTGATCTAATGCAAGCT 1602
> AT5G04870.1 | Symbols: CPK1, ATCPK1 | calcium dependent protein
kinase 1 | chr5:1416783-1420338 REVERSE LENGTH=2526
Length=2526
Score = 1279 bits (692), Expect = 0.0
Identities = 1000/1150 (87%), Gaps = 16/1150 (1%)
Strand=Plus/Plus
Query 74 AACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTTAGAACTGAGTCAG 133
||||| ||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||
Sbjct 814 AACCTAAGAAGCCTAAACACATGAAGAGAGTGTCAAGTGCAGGGCTTAGGACTGAGTCAG 873
Query 134 TGTTGCAGAGGAAAACTGAAAACTTTAAAGAGTTCTATTCATTGGGAAGGAAACTTGGAC 193
||||||||||||| ||||||||||| || || |||||||| |||||||||||||| ||||
Sbjct 874 TGTTGCAGAGGAAGACTGAAAACTTCAAGGAATTCTATTCCTTGGGAAGGAAACTCGGAC 933
Query 194 AAGGCCAATTTGGGACGACGTTTTTATGCCTTGAGAAAG-GTACGGGGAACGAGTATGCG 252
|||| |||||||||||||| |||||||| | ||| ||| ||||||||| |||| |||
Sbjct 934 AAGGGCAATTTGGGACGACTTTTTTATGTGTCGAG-AAGACTACGGGGAAGGAGTTTGCC 992
Query 253 TGTACGTCGATTTCCAAGAGGAAGCTTTTGACGGATGAGGACGTTGAAGATGTGAGAAGG 312
|| | ||||||| | ||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 993 TGCAAGTCGATTGCTAAGAGGAAGCTATTGACTGATGAGGACGTTGAGGATGTGAGAAGA 1052
Query 313 GAGATTCAGATAATGCATCACTTGGCTGGTCATCCAAATGTTATATCTATTAAAGGCGCT 372
|| ||||||||||||||||||||||||||||| || ||||| || || || ||||| |||
Sbjct 1053 GAAATTCAGATAATGCATCACTTGGCTGGTCACCCTAATGTCATCTCCATCAAAGGAGCT 1112
Query 373 TATGAGGATGTTGCT-GCGGTACACCTTGTGATGGAGTTG-TGTTCGGGTGGCGAGCTTT 430
||||||||||||| | || || |||||||| |||||| || ||| | || ||||||||||
Sbjct 1113 TATGAGGATGTTG-TGGCAGTGCACCTTGTAATGGAG-TGTTGTGCAGGCGGCGAGCTTT 1170
Query 431 TTGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGAGCTTGCGAGAA 490
|||| || || |||||||| || || ||||| ||||||||||| |||||||| | ||||
Sbjct 1171 TTGACAGGATCATTCAACGCGGTCACTACACAGAGAGGAAAGCGGCTGAGCTCACTAGAA 1230
Query 491 CCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCGAGACCTCAAGC 550
|||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1231 CCATTGTTGGGGTTGTAGAGGCTTGCCATTCTCTTGGTGTTATGCATCGAGACCTCAAGC 1290
Query 551 CCGAGAATTTTCTATTCGTTAGTAAAGAGGAAGATTCCCTCTTGAAAACGATCGACTTTG 610
||||||||||||| || || |||||| | ||||||||||||||||| ||||| || ||||
Sbjct 1291 CCGAGAATTTTCTGTTTGTCAGTAAACACGAAGATTCCCTCTTGAAGACGATTGATTTTG 1350
Query 611 GACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGGTAGTCCGTATT 670
||||||| ||||||||||| ||||| || ||||||||||||||||||||||| || ||||
Sbjct 1351 GACTCTCCATGTTCTTTAAACCAGACGATGTTTTTACAGATGTTGTTGGTAGCCCATATT 1410
Query 671 ATGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGTGTGGAGTGCTG 730
|||| || |||||||||||| ||||||||||||| |||||| | ||||| ||||||||||
Sbjct 1411 ATGTTGCCCCAGAAGTTCTTCGAAAGCGTTATGGCCCTGAAGCTGATGTCTGGAGTGCTG 1470
Query 731 GTGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTTTGGGCCGAAACCGAACAAG 790
| |||||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct 1471 GAGTGATTGTGTACATTTTATTAAGCGGAGTTCCTCCATTCTGGGCTGAAACCGAACAAG 1530
Query 791 GTATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCCATGGCCAAGCA 850
|||||||||| |||||||| || || |||||||||||||| || |||||||||||||| |
Sbjct 1531 GTATTTTCGAACAGGTCCTCCACGGTGATCTTGACTTTTCGTCCGATCCATGGCCAAGTA 1590
Query 851 TCTCTGAAAGTGCAAAAGACTTGGTGAGGAAAATGCTTGTTC-GGGACCCCACGCGAAGA 909
| |||||||||||||| || || ||||||||||||||||| | |||| |||| | |||
Sbjct 1591 TATCTGAAAGTGCAAAGGATTTAGTGAGGAAAATGCTTGT-CAGGGATCCCAAGAAAAGG 1649
Query 910 CTAACCGCACATCAAGTATTATGTCATCCATGGGTACAGATT-GACGGTGTGGCTCCAGA 968
|||| || || ||||||||||||||||||||||| || | | |||||||||||||||||
Sbjct 1650 TTAACTGCCCACCAAGTATTATGTCATCCATGGGTTCA-AGTCGACGGTGTGGCTCCAGA 1708
Query 969 TAAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAATGAACAAGTT 1028
|| ||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1709 CAAGCCTTTGGATTCTGCTGTTCTGAGCCGTATGAAGCAGTTTTCTGCAATGAACAAGTT 1768
Query 1029 CAAGAAAATGGCTCTTAGATTTTTT-CA-ACTTGTCTTATCCGAAGAAGAAATAGCCGGT 1086
||||||||||||||||||| | || | | | |||||| ||||||||||| |||||
Sbjct 1769 CAAGAAAATGGCTCTTAGAGTCATTGCTGAGA-G-CTTATCTGAAGAAGAAATCGCCGGC 1826
Query 1087 TTAAAAGAAATGTTCAAGATGATTGACACAGACAACAGTGGTCAGATAACTTTTGAAGAA 1146
|| ||||||||||| || ||||| || | ||||| ||||||||||||||||| ||||||
Sbjct 1827 TTGAAAGAAATGTTTAATATGATAGATGCGGACAAGAGTGGTCAGATAACTTTCGAAGAA 1886
Query 1147 CTGAAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAAATTCTTGATCTA 1206
||||||||||||||||||||||| || || |||||||||||||| |||||||| || ||
Sbjct 1887 CTGAAAGCAGGACTAAAACGAGTAGGGGCGAATCTCAAAGAGTCTGAAATTCTCGA-CTT 1945
Query 1207 -ATGCAAGCT 1215
|||||||||
Sbjct 1946 GATGCAAGCT 1955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5