BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905715

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20060.2 | Symbols:  | alpha/beta-Hydrolases superfamily pro...   577    3e-164


> AT5G20060.2 | Symbols:  | alpha/beta-Hydrolases superfamily protein 
| chr5:6776236-6779614 FORWARD LENGTH=1490
Length=1490

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 350/369 (95%), Gaps = 0/369 (0%)
 Strand=Plus/Plus

Query  13    GGTGCAGCGACATCTCTGTATTCTGCAACTTGTTTTGCTCTCGGTAAATATGGAAATGGC  72
             ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  949   GGTGCGGCGACATCTCTATATTCTGCAACTTGTTTTGCTCTCGGTAAATATGGAAATGGC  1008

Query  73    AATCCGTACCCTATCAATTTAAGCACAATCATAGGCTTAAGCGGCTGGCTTCCTTGTGCA  132
             ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1009  AATCCATACCCTATCAATTTAAGCGCAATCATAGGCTTAAGCGGCTGGCTTCCTTGTGCA  1068

Query  133   AAGACATTGGGTGGCAAACTAGAAGAGGAACAGATCAAGAACCGAGCTGCAACGTTGCCC  192
             |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1069  AAGACATTGGCTGGCAAACTAGAAGAGGAACAGATCAAGAACCGAGCTGCATCGTTGCCC  1128

Query  193   ATTATAGTCTGTCATGGAAAAGCTGATGATGTGGTACCGTTCAAGTTTGGGGAGAAATCT  252
             ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1129  ATTGTTGTCTGTCATGGAAAAGCTGATGATGTGGTACCGTTCAAGTTTGGGGAGAAATCT  1188

Query  253   TCACAGGCCTTGCTTTCAAATGGGTTTAAGAAGGTCACCTTTAAACCTTACAGTGCACTT  312
             |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  1189  TCACAGGCTTTGCTTTCAAATGGGTTTAAGAAGGTGACCTTCAAACCTTACAGTGCACTT  1248

Query  313   GGTCACTACACAATCCCGCAGGAGATGGATGAGTTGTGTACGTGGTTGACATCCACCCTC  372
             |||||| |||||||||| |||||| |||||||||||||  | |||||||||||||| |||
Sbjct  1249  GGTCACCACACAATCCCACAGGAGTTGGATGAGTTGTGCGCATGGTTGACATCCACGCTC  1308

Query  373   GGCCTCGAA  381
              ||||||||
Sbjct  1309  AGCCTCGAA  1317



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5