BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905826
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04880.1 | Symbols: ZAP1, ATWRKY1, WRKY1 | zinc-dependent ac... 1319 0.0
> AT2G04880.1 | Symbols: ZAP1, ATWRKY1, WRKY1 | zinc-dependent
activator protein-1 | chr2:1717888-1720526 FORWARD LENGTH=2028
Length=2028
Score = 1319 bits (714), Expect = 0.0
Identities = 814/863 (94%), Gaps = 4/863 (0%)
Strand=Plus/Plus
Query 571 TATCAGCTGTTCACTGTTTGTTATGGTATTATGTGTGTAGAGAAATCATCTGGATCCAGT 630
||| |||||| || ||||| ||||| ||| |||| |||||||||| ||||||||||||||
Sbjct 861 TATAAGCTGTGCATTGTTTCTTATGATATCATGTTTGTAGAGAAAACATCTGGATCCAGT 920
Query 631 GTTCAGGCACATCGTCAAACCGAACCACCGAAGATCCATGGAGGATTACATGTTTCTGTT 690
|||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 921 GTTCAGACACTTCGTCAAACCGAACCACCAAAGATCCATGGAGGATTACATGTTTCAGTT 980
Query 691 ATTCCACCAGCTGATGATGTGAAAACTGATATTTCACAATCAAGTAGGATAAAAGGCGAC 750
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 981 ATTCCACCAGCTGATGATGTGAAAACTGATATTTCACAATCAAGTAGGATAACGGGGGAC 1040
Query 751 AACACTCACAAAGATTATAATAGTCCTACCTCAAAGCGAAGGAAGAAAGGAGGGAACATC 810
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1041 AACACTCACAAGGATTATAATAGTCCTACCGCAAAGCGAAGGAAGAAAGGAGGGAACATT 1100
Query 811 GAGCTGAGTCCAGTCGAGAGGTCAACCAATGATTCACGCATTGTTGTTCACACTCAGACT 870
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1101 GAGCTGAGTCCAGTGGAGAGGTCAACCAATGATTCACGCATTGTGGTTCACACTCAGACT 1160
Query 871 CTGTTTGATATTGTGAATGATGGGTATCGATGGCGTAAATATGGACAGAAATCAGTGAAA 930
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1161 CTGTTTGATATTGTGAATGATGGGTACCGATGGCGTAAATATGGTCAGAAATCAGTAAAA 1220
Query 931 GGCAGCCCATATCCAAGGAGCTACTATAGATGTTCAAGCTCTGGATGCCCCGTCAAGAAA 990
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1221 GGCAGCCCATATCCAAGGAGCTACTATAGATGTTCAAGCCCTGGATGCCCCGTCAAGAAA 1280
Query 991 CACGTAGAGAGGTCATCTCATGACACAAAGTTACTTATAACGACTTACGAGGGAAAACAC 1050
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1281 CACGTAGAGAGGTCATCTCATGACACAAAGTTGCTTATAACAACTTACGAGGGAAAACAC 1340
Query 1051 GACCACGATATGCCTCCAGGAAGGGTTGTTACTCATAATAACATGCTGGACTCCGAAGTA 1110
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1341 GACCACGATATGCCTCCAGGAAGAGTTGTTACTCATAATAACATGCTGGACTCGGAAGTT 1400
Query 1111 GATGATAAAGAAGGAGATGCCAACAAGACTCCACAGAGCTCAGCTCTTCAATCTATTACA 1170
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1401 GATGATAAAGAAGGAGATGCCAACAAGACTCCACAGAGCTCAACTCTTCAATCCATTACA 1460
Query 1171 AAAGACCAGCATGTCGAAGATCACCCAAGAAAGAAAACGAAGACTAATGGCTTTGAGAAA 1230
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1461 AAAGACCAGCATGTCGAAGATCACTTAAGAAAGAAAACGAAGACTAATGGCTTTGAGAAA 1520
Query 1231 AGTCGTGATCAAGGTCCAGTTTTGGATGAGAAGCTGAAGGAGAAAATAAAAGACAGATCA 1290
|||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1521 AGTCTTGATCAAGGTCCAGTTTTGGATGAGAAGCTGAAGGAGGAAATAAAAGAGAGATCA 1580
Query 1291 GATGTGAACAAAGATCAAGCAGCCAATCACGCCAAGCCGGA-GACAAAGTCAGATGATAA 1349
|||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1581 GATGCAAACAAAGATCACGCAGCCAATCACGCCAAGCCGGAAG-CAAAGTCAGATGATAA 1639
Query 1350 AACCACTGCTTGTCATGAGAAGGCAGT-GGTAACCCTGGAGAATGAGGAACAGAAACCCA 1408
|||||||| |||||| ||||||||||| || ||||||||||| |||||||| |||||||
Sbjct 1640 AACCACTGTTTGTCAAGAGAAGGCAGTAGG-AACCCTGGAGAGCGAGGAACAAAAACCCA 1698
Query 1409 AGACAGAGCCTGCCCGAAGCTAA 1431
||||||||||||||| |||||||
Sbjct 1699 AGACAGAGCCTGCCCAAAGCTAA 1721
Score = 725 bits (392), Expect = 0.0
Identities = 504/558 (90%), Gaps = 7/558 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAGGTGGGAAAAGTTCCGGCTAGTGACATGGAACTAG-CCGATTCAAGCGAGAG 59
|||||||||||||||||||||| ||||||||| ||||| ||| || |||||| ||||
Sbjct 258 ATGGCTGAGGTGGGAAAAGTTCTGGCTAGTGATATGGAGTTAGACC-ATTCAAATGAGAC 316
Query 60 TAAAGCA---GCTGATGATGTTGCCGCCACTGATAAAGCGGAGGTCACACCAGTGACTGT 116
||||||| | ||||| ||||||| | ||||||||||||||||||| ||||||| ||||
Sbjct 317 TAAAGCAGTGGATGATGTTGTTGCCACTACTGATAAAGCGGAGGTCATACCAGTGGCTGT 376
Query 117 AACTATAACTGAAACCGTTGTTGAAAGTTCGAAATCTACGGACTGCAAGGAGCTACAACA 176
||||| ||||||||||||||||||||||| | ||||||| ||||| |||||||| || |
Sbjct 377 AACTAGAACTGAAACCGTTGTTGAAAGTTTGGAATCTACTGACTGTAAGGAGCTTGAAAA 436
Query 177 ACTTGTTCCTCATACCGTAGCTTCACTGTCAGAAGTAGATGTTGCTTCCCCGGTATCCGA 236
||||||||| ||||| |||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 437 ACTTGTTCCACATACGGTAGCTTCGCAGTCGGAAGTAGATGTTGCTTCCCCGGTATCCGA 496
Query 237 GAAAGCACCGAAGATTTCGGAAAGTAGCACTGCATTATCTTTGCAATCTGGTTCAGAAGG 296
||||||||||||| |||| ||||||||| ||||||||||||||| |||||||| |||||
Sbjct 497 GAAAGCACCGAAGGTTTCTGAAAGTAGCGGTGCATTATCTTTGCAGTCTGGTTCGGAAGG 556
Query 297 GAATAGTCCTTTTATTCGTGAGAAAGTTATGGAAGACGGATACAATTGGCGGAAATATGG 356
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 557 GAATAGTCCTTTTATTCGTGAGAAGGTTATGGAAGACGGATACAACTGGCGGAAATATGG 616
Query 357 ACAGAAACTTGTTAAAGGAAATGAGTTTGTAAGGAGCTATTATAGGTGCACACACCCAAA 416
|||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 617 ACAGAAACTTGTGAAAGGAAATGAGTTTGTAAGGAGCTATTACAGGTGCACTCACCCTAA 676
Query 417 CTGCAAAGCGAAAAAGCAGTTGGAACGGTC-GTCTGGTGGACAAGTCGTGGACACCGTTT 475
||||||||||||||| |||||||||||||| | | ||||||||||||||||| |||||||
Sbjct 677 CTGCAAAGCGAAAAAACAGTTGGAACGGTCTG-CGGGTGGACAAGTCGTGGATACCGTTT 735
Query 476 ACTTTGGTGAACATGATCATCCAAAGCCTCTTACTGGTGCTGTTCTTATCAATCAAGATA 535
||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||| ||||
Sbjct 736 ACTTTGGGGAACATGATCACCCAAAGCCTCTTGCTGGTGCTGTTCCTATCAATCAGGATA 795
Query 536 AACGAAGTGATGTCTTCA 553
| ||||||||||||||||
Sbjct 796 AGCGAAGTGATGTCTTCA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5